Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L18
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...   153   2e-37
At1g03890.1 68414.m00373 cupin family protein similar to Arabido...    30   1.8  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    29   4.1  
At1g68910.1 68414.m07886 expressed protein similar to Myosin hea...    29   4.1  
At5g15070.1 68418.m01766 expressed protein                             28   7.1  
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi...    28   7.1  
At1g48390.1 68414.m05405 syntaxin-related family protein contain...    28   9.4  

>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score =  153 bits (370), Expect = 2e-37
 Identities = 86/225 (38%), Positives = 114/225 (50%)
 Frame = +3

Query: 183 SNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKS 362
           S K+F GY K Y H S  L C M FSIY PP A     K P+LY+LSGLTC+++NFI KS
Sbjct: 10  STKMFDGYNKRYKHFSETLGCSMTFSIYFPPSASSSH-KSPVLYWLSGLTCTDENFIIKS 68

Query: 363 GFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLN 542
           G QR A+ HG+ +V PDTSPRG+ ++G+  S+DFGV AGFYL+AT E W  N+RM  Y+ 
Sbjct: 69  GAQRAASTHGIALVAPDTSPRGLNVEGEADSYDFGVGAGFYLNATQEKW-KNWRMYDYVV 127

Query: 543 VELYDLILKAFCNVVDPNRXXXXXXXXXXXXCFXFYSEESWPVQVSKRFCCYL*SKCLSM 722
            EL  L+ + F + +D  +                Y       +    F         + 
Sbjct: 128 KELPKLLSENF-SQLDTTKASISGHSMGGHGALTIYLRNLDKYKSVSAFAPITNPINCAW 186

Query: 723 GSEGFXWIFXXXXXXXXXXXCHRAGXKYNGPPLTLLLDQGSGDKF 857
           G + F                     KYN    T+L+DQG  D+F
Sbjct: 187 GQKAFTNYLGDNKAAWEEYDATCLISKYNNLSATILIDQGENDQF 231



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = +1

Query: 628 GMGALXSTLRNPGQYKSVSAFAAICNPSACPWGVKAFXGYLGEDKSKWAEWDATELV 798
           G GAL   LRN  +YKSVSAFA I NP  C WG KAF  YLG++K+ W E+DAT L+
Sbjct: 155 GHGALTIYLRNLDKYKSVSAFAPITNPINCAWGQKAFTNYLGDNKAAWEEYDATCLI 211


>At1g03890.1 68414.m00373 cupin family protein similar to
           Arabidopsis thaliana 12S seed storage proteins SP|P15455
           [gi|808937] and SP|P15456, Brassica napus cruciferin
           storage protein, gi|762919, and others; contains Pfam
           profile PF00190 Cupin; Location of ESTs YAY049-3' end,
           gb|Z26364 and YAY049-5' end, gb|Z26363
          Length = 451

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 132 FPEAHQKSNMDSLQLESSNKIFGGYQKVYSHASSELKC 245
           FP A   S ++SL    + K   G  +V+ H S EL+C
Sbjct: 32  FPNACHFSQINSLAPAQATKFEAGQMEVWDHMSPELRC 69


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 469 TPKSHDESSPSILTPRGEVSGPTTITPCSAAYLWKPDLVM 350
           +PK  DES P +     + S P    P     LWKP++ +
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWKPNVTI 221


>At1g68910.1 68414.m07886 expressed protein similar to Myosin heavy
           chain, nonmuscle type B (Cellular myosin heavy chain,
           type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B)
           (Swiss-Prot:Q27991) [Bos taurus]; contains 1
           transmembrane domain
          Length = 627

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 589 ILIELVLWDTAWEGMGALXSTLRNPGQYKSVSAFAAIC 702
           +L+ L+ WD   EGMG L S   +P  ++    F  +C
Sbjct: 47  LLMHLLAWDNDLEGMGTLDS---SPASFEKALTFDLLC 81


>At5g15070.1 68418.m01766 expressed protein
          Length = 1049

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +3

Query: 153 SNMDSLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLT 332
           S M++ + + +  I  G + V+ H SSEL   M     LPP A   D  LP L  L+   
Sbjct: 590 SEMEAAKAQLNEIITAGSKMVHDHVSSELPW-MTDGAGLPPHA---DEHLPELVKLAKKV 645

Query: 333 CSEQNFITKSGFQRYAAEHGVIVVGP 410
             +   + +   +  A      VV P
Sbjct: 646 TEQVRLLAQDEHENLAEPSAYDVVPP 671


>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 572

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 204 NHQKFYWTILIASCPCLI--SDEPPEKLYSQLXCNHYLPR 91
           ++  +YW     SC CL+  +DE  + L+ QL  N + PR
Sbjct: 472 SNDDWYWLYAAVSCKCLLVTNDEMRDHLF-QLLGNSFFPR 510


>At1g48390.1 68414.m05405 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g44180,
           At3g58890, At1g56610, At1g48390, At3g59270 [Arabidopsis
           thaliana]
          Length = 413

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 438 DGDDSSWDFGVSAGFYLDATN 500
           DGD   WDF V   +Y D TN
Sbjct: 235 DGDVYGWDFNVPFDYYGDVTN 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,518,260
Number of Sequences: 28952
Number of extensions: 416722
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)