Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L17
         (928 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   7.1  
SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             29   7.1  
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             29   7.1  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                28   9.3  

>SB_52706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +1

Query: 130 SACPSQHPRYAPSSTP------MPGSTHSDCTPKWSR*STGG 237
           +A PS+ PR++P+STP      +PG +  D +P  +  ST G
Sbjct: 35  NAPPSKSPRHSPASTPTSSWHDLPGPSLPDNSPSVASTSTSG 76


>SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +1

Query: 130 SACPSQHPRYAPSSTP------MPGSTHSDCTPKWSR*STGG 237
           +A PS+ PR++P+STP      +PG +  D +P  +  ST G
Sbjct: 148 NAPPSKSPRHSPASTPTSSWHDLPGPSLPDNSPSVASTSTSG 189


>SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 206

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 134 HARVSTL--AMHHPRPPCLVRPTATAPRSGVVDL 229
           H R ST   ++H  +PP LV  TA   R+GV+ L
Sbjct: 119 HRRTSTTRSSVHESKPPVLVHCTAGVGRTGVIIL 152


>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 531 LFLXEDLXDSLXFGVLLWCLTYVGACFN 614
           LFL EDL DS+   V+L+ L+Y+   F+
Sbjct: 36  LFLVEDLADSIKLLVVLYILSYLAQWFS 63


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +3

Query: 360 FRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXLYXLXXLFL 539
           +R+   V+ A+QK+   +PFK LL+  +                  H+      L  LFL
Sbjct: 422 YRVGMTVMGAIQKSGTENPFKTLLD--KEIEIPKEKAVEMAESLAEHINCLTKSLRRLFL 479

Query: 540 XEDLXDSL 563
            ED+ DS+
Sbjct: 480 VEDIVDSI 487


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 SHSHALRKVSACPSQHPRYAPSSTPMPGST 192
           +H   LR  +A P + P  AP+  P  GST
Sbjct: 148 THGSTLRSTNAGPMRSPNDAPNDAPTHGST 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,255
Number of Sequences: 59808
Number of extensions: 185160
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2693287426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)