Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L17
(928 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 40 0.003
U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated p... 30 2.7
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 2.7
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 30 2.7
U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1 dual-specif... 30 2.7
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 30 2.7
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 30 2.7
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 30 2.7
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 30 2.7
AC024755-4|AAK84603.1| 225|Caenorhabditis elegans Hypothetical ... 29 4.7
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 46.0 bits (104), Expect = 4e-05
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 2/153 (1%)
Frame = +3
Query: 162 TILDPH--AWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 335
+IL H AW D + + P V +IYWR+
Sbjct: 356 SILKHHGDAWIDFKTVPPCVLDVIYWRDAKKSAIVLSLALLVLFVLAKYPLLTVVTYSLL 415
Query: 336 XXXXXXXXFRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXL 515
FR++K V ++KT+ HPF +L TL + H
Sbjct: 416 LALGAAAGFRVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIA 473
Query: 516 YXLXXLFLXEDLXDSLXFGVLLWCLTYVGACFN 614
L L E +S+ FG++LW LTY+ + F+
Sbjct: 474 NKLKKLVFVESPLESIKFGLVLWSLTYIASWFS 506
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 46.0 bits (104), Expect = 4e-05
Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 2/153 (1%)
Frame = +3
Query: 162 TILDPH--AWFDPQRLHPEVESLIYWRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 335
+IL H AW D + + P V +IYWR+
Sbjct: 2270 SILKHHGDAWIDFKTVPPCVLDVIYWRDAKKSAIVLSLALLVLFVLAKYPLLTVVTYSLL 2329
Query: 336 XXXXXXXXFRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXL 515
FR++K V ++KT+ HPF +L TL + H
Sbjct: 2330 LALGAAAGFRVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIA 2387
Query: 516 YXLXXLFLXEDLXDSLXFGVLLWCLTYVGACFN 614
L L E +S+ FG++LW LTY+ + F+
Sbjct: 2388 NKLKKLVFVESPLESIKFGLVLWSLTYIASWFS 2420
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 360 FRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXLYXLXXLFL 539
FR++K V ++KT+ HPF +L TL + H L L
Sbjct: 58 FRVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIANKLKKLVF 115
Query: 540 XEDLXDSLXFGVLLWCLTYVGACFN 614
E +S+ FG++LW LTY+ + F+
Sbjct: 116 VESPLESIKFGLVLWSLTYIASWFS 140
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 360 FRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXLYXLXXLFL 539
FR++K V ++KT+ HPF +L TL + H L L
Sbjct: 76 FRVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIANKLKKLVF 133
Query: 540 XEDLXDSLXFGVLLWCLTYVGACFN 614
E +S+ FG++LW LTY+ + F+
Sbjct: 134 VESPLESIKFGLVLWSLTYIASWFS 158
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 360 FRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXLYXLXXLFL 539
FR++K V ++KT+ HPF +L TL + H L L
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIANKLKKLVF 2518
Query: 540 XEDLXDSLXFGVLLWCLTYVGACFN 614
E +S+ FG++LW LTY+ + F+
Sbjct: 2519 VESPLESIKFGLVLWSLTYIASWFS 2543
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +3
Query: 360 FRLYKNVLQAVQKTNDGHPFKWLLEGGR*TLSXXXARXRWXXXXTXHLXAXLYXLXXLFL 539
F ++K V ++KT+ HPF +L TL + H L L
Sbjct: 2342 FSVFKKVEAQIKKTDSEHPFSEILAQDL-TLPQEKVHAQ-ADVFVEHATCIANKLKKLVF 2399
Query: 540 XEDLXDSLXFGVLLWCLTYVGACFN 614
E +S+ FG++LW LTY+ + F+
Sbjct: 2400 VESPLESIKFGLVLWSLTYIASWFS 2424
>U55374-7|AAP82641.1| 286|Caenorhabditis elegans Uncoordinated
protein 2, isoform d protein.
Length = 286
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 103 SHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTPKWSR 222
SHSH+ S P Y+ S P S+HS TP+ S+
Sbjct: 181 SHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQ 220
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 103 SHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTPKWSR 222
SHSH+ S P Y+ S P S+HS TP+ S+
Sbjct: 1821 SHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQ 1860
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 103 SHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTPKWSR 222
SHSH+ S P Y+ S P S+HS TP+ S+
Sbjct: 1922 SHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQ 1961
>U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform c
protein.
Length = 439
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 CPSQHPRYAPSSTPMPGSTHSDCTP 210
CP + P+ A S+ PGSTH + +P
Sbjct: 188 CPPKVPKSASSNCVFPGSTHDESSP 212
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 CPSQHPRYAPSSTPMPGSTHSDCTP 210
CP + P+ A S+ PGSTH + +P
Sbjct: 292 CPPKVPKSASSNCVFPGSTHDESSP 316
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 CPSQHPRYAPSSTPMPGSTHSDCTP 210
CP + P+ A S+ PGSTH + +P
Sbjct: 343 CPPKVPKSASSNCVFPGSTHDESSP 367
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 136 CPSQHPRYAPSSTPMPGSTHSDCTP 210
CP + P+ A S+ PGSTH + +P
Sbjct: 343 CPPKVPKSASSNCVFPGSTHDESSP 367
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 103 SHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTPKWSR 222
SHSH+ S P Y+ S P S+HS TP+ S+
Sbjct: 1922 SHSHSHHPTSQQQQHQPMYSTSPLISPRSSHSYYTPRSSQ 1961
>AC024755-4|AAK84603.1| 225|Caenorhabditis elegans Hypothetical
protein Y34B4A.9 protein.
Length = 225
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 153 SLCTILDPHAWFDPQRLHPEVES 221
++ +I DP WFDP+ EVE+
Sbjct: 40 AVLSISDPQPWFDPENFRKEVET 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,107,480
Number of Sequences: 27780
Number of extensions: 134529
Number of successful extensions: 500
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -