Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L17
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.56 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.56 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.97 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 KNVLQAVQKTNDGHPFKWLLEGG 440
           + +L+A +++N   PF+WL   G
Sbjct: 210 RGILEAARRSNLSQPFQWLASDG 232


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 KNVLQAVQKTNDGHPFKWLLEGG 440
           + +L+A +++N   PF+WL   G
Sbjct: 300 RGILEAARRSNLSQPFQWLASDG 322


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 101  FLILTRYVKCQHARVST-LAMHHPRPPCLVRPTATAP 208
            F++ +  V+ +H      L +HH   PC++R +  AP
Sbjct: 1079 FVLHSLAVELEHGAAGLRLCLHHRDLPCVLRASTPAP 1115


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 192 GRTRHGGRGWCIA 154
           G+TRH   G CIA
Sbjct: 820 GKTRHQNTGCCIA 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,273
Number of Sequences: 438
Number of extensions: 1614
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)