Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L17
         (928 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    30   1.9  
At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid t...    29   4.4  

>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 139 PSQHPRYAPSSTPMPGSTHSDCTPK 213
           PS  P +APS +P    +HS  TPK
Sbjct: 253 PSHSPAHAPSHSPAHSPSHSPATPK 277


>At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to 14 kDa
           polypeptide [Catharanthus roseus] GI:407410; contains
           Pfam protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 137

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 136 CPSQHPRYAPSSTPMPGSTHSDCTPK 213
           CPS  P+  P  TP P S  S C PK
Sbjct: 33  CPSPKPKPTPKPTPSPSSGSSKC-PK 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,687,522
Number of Sequences: 28952
Number of extensions: 125349
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2207676696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)