Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L14
         (975 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.1  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   8.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   8.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   8.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 882 PPPPPPP 902
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 883 PPPPPPP 903
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 886 PPPPPPP 906
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 883 PPPPPPPPXXXXXRXXXXPXPPPXPXPP 966
           P P  PP           P  PP P PP
Sbjct: 160 PGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 883 PPPPPPPPXXXXXRXXXXPXPPPXPXPP 966
           P P  PP           P  PP P PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPP 187



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 820 PXPPPPSPXXPXXXXPXXPXXPPPPPPP 903
           P P  P         P  P  PP P PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
 Frame = +2

Query: 851 PXXPXXXXPXXP-PPPPPPXPXXXXXXXXPPXPPPXPXPP 967
           P  P    P    P P    P         P  PP P PP
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 874 PXXPPPPPPPP 906
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 821 PPPPXXPXXPPXXPXXXXP 877
           PPPP     PP  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 821 PPPPXXPXXPPXXPXXXXP 877
           PPPP     PP  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 818 PPPPPXXPXXPPXXPXXXXPXXPPPP 895
           PPP P     P        P   PPP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPP 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,708
Number of Sequences: 336
Number of extensions: 5547
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27616611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)