Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L13
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    31   0.82 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   1.4  
U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 179  CISGKRGRRC--CNIWHWGSVDSISGSHARFQLSGN 280
            C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 974  CKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 374  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 222
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical
           protein D2021.2b protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 227 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 382
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 23  GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76


>U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical
           protein D2021.2a protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 227 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 382
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,293,595
Number of Sequences: 27780
Number of extensions: 212112
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)