Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L12
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20380.1 68418.m02424 transporter-related low similarity to v... 30 1.8
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 2.3
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.1
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 29 4.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.4
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 7.2
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 28 7.2
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 28 9.5
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 523 GLFTVPGLLLAFCSHVLSCVITLILWITVLPPLSELIPLAAAER 392
G +T L + S LS +T W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 748 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 632
P A R RH+ R +GG+ S R R R + GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 650 LVRSPVPTLPLTGYLSAFLPSGSVAL 727
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 551 RPPDEHHKNRRSSQRW 598
RPPDEH NR S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 359 PLPRSLTRCARSFGCGERYQLTQRR 433
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 359 PLPRSLTRCARSFGCGERYQLTQRR 433
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 350 PIRKPPLPARWPIH*CRKNLPHL 282
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 472 SCVITLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 299
S I + L IT++PP + + A++P + N+L P+ R I AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAE 312
Query: 298 KTSHTSTLNLKHKM 257
K +HT LN +K+
Sbjct: 313 KPTHTDELNFMNKL 326
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
profile PF05182: Fip1 motif
Length = 1192
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 796 VHTAQLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 662
V T G ND R+EIP KRH G ++ ++GR +
Sbjct: 1007 VVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,354
Number of Sequences: 28952
Number of extensions: 346773
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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