Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L11
         (899 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.18 
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                29   6.8  
SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     28   8.9  
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)          28   8.9  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 33/109 (30%), Positives = 42/109 (38%)
 Frame = +3

Query: 237 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 416
           Q G G  FGT      GLFG AG N        G +TG  +G         ST +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 417 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKXTHFSAGGMVSKEFG 563
            A  N       N    G    T +G+G++   +   F  GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGAAF--GGTSTSGFG 146


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 255 VFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNA 434
           VFG+ GQ    LF  +       N+ +  L G  +GT  LG G      G     ++ N 
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQGTGLLGNGTVATASSNNL 144

Query: 435 QAT 443
            AT
Sbjct: 145 PAT 147


>SB_47127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 243
           M+ FTD LI+  I+ S     GD LV      +W
Sbjct: 1   MKHFTDTLISANIVESNSCSPGDPLVLERPPPRW 34


>SB_32567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 MQKFTDLLITQKIIRSGGSPQGDTLVTSLGTNKW 243
           M+ FTD LI+  II S     GD LV      +W
Sbjct: 1   MKHFTDTLISANIISSNSCSPGDPLVLERPPPRW 34


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 312 REIFNDDRGKLTGQAYGT---RVLG-PGGDSTNYGGRLDWANKNAQATI 446
           R ++ND   +L G +      R +  PG   T Y  R+D   KN+Q TI
Sbjct: 633 RTLYNDSDSRLGGMSTSLAEFRTINLPGSSVTKYMERIDEIRKNSQRTI 681


>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
          Length = 495

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
 Frame = +3

Query: 270 GQNDDGLFGKAGYNREIFND-DRGKLTGQAYGTR-VLGPGGDSTNYGGRLDWANKNAQAT 443
           G+++    G+AG+ R    D DRG+       TR VL   G  TN GG  +W N      
Sbjct: 300 GEDEVHTAGEAGFRRRYPADFDRGRAKEDVEDTRGVLYWLG--TN-GGLTEWKNPGEAGL 356

Query: 444 IDLNRQIGGRSGMT--ASGSGVWDLDKXTHFSAGGMVSKEFGHKRPDVGLQAEIRHDW 611
           + + R   G    T  A     W     T          +FG KR  V     +RH W
Sbjct: 357 VTITRSSYGHGKATDAADRRPSWC---STSNKPNQWWKIDFGDKRTVVANGYRLRHGW 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,842,608
Number of Sequences: 59808
Number of extensions: 564681
Number of successful extensions: 1265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)