Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L11
         (899 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             31   0.79 
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    30   1.8  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   4.2  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.6  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.3  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    28   7.3  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   7.3  
At5g01790.1 68418.m00098 expressed protein                             28   9.7  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 141 NAEVYGPFDYAEDYSIRGQPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNRE 317
           + E++G  ++A D S   + SRR  RD   +K+  GG  FG      D +  ++GY  E
Sbjct: 141 SGELFGEANWASDVSEAARNSRRERRDSGGEKEASGG--FG-FANGVDPMGNESGYGSE 196


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +3

Query: 195 QPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 371
           Q   +H +D    +Q       G L Q   G  G +  + +IF +D  K     Y  +R+
Sbjct: 356 QQRMKHLKDTKLREQFFEQNGGGMLTQRLSGA-GPSNVDVKIFTEDGMKKATNGYAESRI 414

Query: 372 LGPGGDSTNYGGRL 413
           LG GG  T Y G L
Sbjct: 415 LGQGGQGTVYKGIL 428


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 301 AFPKSPSSFCPKVP--KTLPPP 242
           A P  PSSFCPK P    +PPP
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPP 160


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 324 NDDRGKLTG--QAYGTRVLGPGGDSTNYGGR 410
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +3

Query: 294 GKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTN----YGGRLDWANKNAQATIDLNRQ 461
           G   Y+   +NDD  K    A GT+  G  G+ +N    YG     ++   QAT ++   
Sbjct: 579 GSTDYDTSQYNDDMIKFRKMALGTQEYGTTGEYSNPTSDYGLYPSGSSSEGQATREMEMG 638

Query: 462 IGGRSGMTASG 494
              ++G   SG
Sbjct: 639 KIKKTGQGYSG 649


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 28/119 (23%), Positives = 46/119 (38%)
 Frame = +3

Query: 183 SIRGQPSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 362
           S+ G      PR  +W  Q   G  +G +G  +   +G +G          G   G  YG
Sbjct: 277 SVPGAGFGSGPRS-SWGAQAPSG--YGNVGYGNAAPWGGSGGPGSAVMGQAGASAG--YG 331

Query: 363 TRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKXTHFSAG 539
           ++  G GG+ ++YG    +     ++    N   GG       GSG +   +  +  AG
Sbjct: 332 SQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGGGYADALDGSGGYGNHQGNNGQAG 390


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 267 LGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 416
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 304 PAFPKSPSSFCPKVPKTLPPP 242
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,258,588
Number of Sequences: 28952
Number of extensions: 379876
Number of successful extensions: 1002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)