Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L10
(1257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.47
08_01_0059 - 394001-394708 32 1.1
07_03_0559 + 19475893-19476783 31 1.9
12_02_1174 - 26696869-26698191 31 2.5
11_06_0610 - 25449085-25453284 31 2.5
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 31 2.5
09_04_0430 + 17502387-17503505 31 2.5
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 31 2.5
05_01_0142 - 940421-940701,941262-941574 30 3.3
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 30 4.4
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 29 5.8
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 29 5.8
07_03_1751 - 29215074-29216270 29 7.7
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 29 7.7
03_02_0765 + 11000724-11002496 29 7.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.47
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +2
Query: 890 IXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXP 1042
+ + PP P + PPP AP PP+G P ++ P P
Sbjct: 308 VASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
Score = 29.5 bits (63), Expect = 5.8
Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Frame = +2
Query: 860 RPXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRP---XR 1030
+P A P PP P + PPPA P PP+G P P
Sbjct: 320 KPAAAAPPPPPPPKAAPPPPPPKGP----PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 1031 XPXPXXXRYXTXXPXAPVGRP 1093
P P + P A G P
Sbjct: 376 GPPPPPPKGGASRPPAAPGVP 396
>08_01_0059 - 394001-394708
Length = 235
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 908 PPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXP 1042
PP P + PPP P PP P T RP P P
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPP 48
Score = 29.1 bits (62), Expect = 7.7
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 908 PPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXR-YXTXXPXAPV 1084
PP P +R +PPP A P PPR P S P R P P R Y P P+
Sbjct: 3 PPPPPRR-------APPPPATPPP--PPRRA-PPPPSPPIRPPPPPTPRPYAPPPPSHPL 52
Query: 1085 GRP 1093
P
Sbjct: 53 APP 55
>07_03_0559 + 19475893-19476783
Length = 296
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGG 908
G G G G G GC GG GGG A GG+GG
Sbjct: 77 GGGGLGGGGGFGGGGGGGLGGGGCEGGGFGGGVGGGSGAGGGLGG 121
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 2.5
Identities = 26/110 (23%), Positives = 31/110 (28%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKX 886
PP T PPP P P P L P + + V +P
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQP-PPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQ 186
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXP 1036
P + PP P R P P PP P + P R P
Sbjct: 187 P---PSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTP 233
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 2.5
Identities = 38/176 (21%), Positives = 49/176 (27%), Gaps = 8/176 (4%)
Frame = +2
Query: 590 HXPXXPAXLXPQRXXXPSXXXX-KAXPXXXQAGRKPVGXR--PP---SNGTXXXXSXXPP 751
H P P P P+ + P G P + PP S T S PP
Sbjct: 636 HTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPP 695
Query: 752 PAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKXPIXAXTXPPHPXQRX 931
P P P + + P T E P A P + PP
Sbjct: 696 PPAPEGHMPSPPK--STPPVEKSPP--TPESEASSPPPPAPEGHTPSPPKSSPPEEKSPP 751
Query: 932 XRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXP--XPXXXRYXTXXPXAPVGRP 1093
+ PP PP+ P + S P P P + T P + P
Sbjct: 752 IPPTSHTSPPTPEEYTPSPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPP 807
>10_08_0495 - 18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 953 PPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVGRP 1093
PPP++ AP Q P G P SRP Y P P G P
Sbjct: 754 PPPSSHAPHAQGPYGVPPGGDSRPGYSQPEQRPAY--SQPYPPYGAP 798
>09_04_0430 + 17502387-17503505
Length = 372
Score = 30.7 bits (66), Expect = 2.5
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = +2
Query: 908 PPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVG 1087
PP P Q+ P P AP PPR P Q++ P P + P A
Sbjct: 159 PPAPMQQPQPQPPPQPTPPRAAPLPTPPRA--PPQSTPPRAAPQSTPPQRVAPQPPATAA 216
Query: 1088 RP 1093
P
Sbjct: 217 AP 218
>06_03_1006 + 26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 875 TRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSR 1021
TR P + T PP P PPP++ AP + P T+R
Sbjct: 158 TRPAPSPSPTGPPTPSPTNPNLEPSPPPPSSSAPPSRTPSNSSDGPTTR 206
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.3 bits (65), Expect = 3.3
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Frame = +2
Query: 953 PPPAAXAPXX---QPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVGRPXTLXXXXSAN 1123
PPP A P PP G P Q P P Y P G P +
Sbjct: 49 PPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQHGGYPPAGYPGSSGHQGGHG 108
Query: 1124 SSGYAH 1141
SSG H
Sbjct: 109 SSGGGH 114
>07_03_1710 - 28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 863 PXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXP 1036
P + T P+ + P + SPPPA P +PP Q RP P
Sbjct: 39 PPSPTTCYPVSSAAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSPP 96
>04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 953 PPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXR 1054
PPP A AP PPR T RP P R
Sbjct: 394 PPPLAQAPPRHPPRPWCRPHTPRPRSPHSPTHPR 427
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 29.5 bits (63), Expect = 5.8
Identities = 22/61 (36%), Positives = 22/61 (36%)
Frame = +2
Query: 860 RPXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPX 1039
RP RK P PP P R PPPA AP PP P RP P
Sbjct: 110 RPPPPPRKKP--QFQPPPQPP-RAWDPSPPPPPPAPAAPVLVPP----PAPAPRPAPAPA 162
Query: 1040 P 1042
P
Sbjct: 163 P 163
>07_03_1751 - 29215074-29216270
Length = 398
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = -3
Query: 1036 GXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGG 908
G SG GL G G GG GGG A GG GG
Sbjct: 183 GGSGGGGGLGGGAGGGAGVGGGAGGGAGGGGGLGGGAGGGAGG 225
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 887 PIXAXTXPPHPXQRXXRXL-XXSPPPAAXA 973
P+ PP P QR R L SPPPAA A
Sbjct: 221 PVRPPPPPPPPRQRLLRPLPAESPPPAALA 250
>03_02_0765 + 11000724-11002496
Length = 590
Score = 29.1 bits (62), Expect = 7.7
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 1081 GSXRXXGXIAXXXGXGXSGWA-AGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGG 908
G G + G G G A AG AG G GG GGG A GG+GG
Sbjct: 296 GGTGGGGGLGGGAGGGLGGGAGAGGGLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGG 354
Score = 29.1 bits (62), Expect = 7.7
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 1081 GSXRXXGXIAXXXGXGXSGWA-AGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGG 908
G G + G G G A AG AG G GG GGG A GG+GG
Sbjct: 336 GGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGAGGGGGLGGGAGGGGGLGGGAGGGLGG 394
Score = 29.1 bits (62), Expect = 7.7
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = -3
Query: 1081 GSXRXXGXIAXXXGXGXSGWA-AGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGG 908
G G + G G G A AG AG G GG GGG A GG+GG
Sbjct: 376 GGAGGGGGLGGGAGGGLGGGAGAGGGLGGGAGTGGGGGLGGGAGGGGGLGGGAGGGLGG 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,059,789
Number of Sequences: 37544
Number of extensions: 233802
Number of successful extensions: 1243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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