Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L10
(1257 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.1
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 1.5
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 1.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 2.6
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 30 4.5
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 29 5.9
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/52 (30%), Positives = 18/52 (34%)
Frame = +2
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXP 1042
P + PP P +PPP A AP PP P P P P
Sbjct: 43 PHFISSSPPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAP 94
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 31.5 bits (68), Expect = 1.5
Identities = 25/99 (25%), Positives = 29/99 (29%), Gaps = 2/99 (2%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAX--PTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTR 880
PPSN PP P P P P+ P
Sbjct: 288 PPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPIS 347
Query: 881 KXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRG 997
K P + PP P R + L PPP P +PP G
Sbjct: 348 KPPTSTRSAPPPPPGRAPQPLGGPPPP---PPGRRPPSG 383
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 31.5 bits (68), Expect = 1.5
Identities = 25/99 (25%), Positives = 29/99 (29%), Gaps = 2/99 (2%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAX--PTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTR 880
PPSN PP P P P P+ P
Sbjct: 200 PPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPIS 259
Query: 881 KXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRG 997
K P + PP P R + L PPP P +PP G
Sbjct: 260 KPPTSTRSAPPPPPGRAPQPLGGPPPP---PPGRRPPSG 295
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +2
Query: 953 PPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVGRP 1093
PPP P PP P Q S P P + P +P G P
Sbjct: 683 PPPPPPPPPPPPPPPPPPPQPSTPPPPPPSTPPVQQSGAPGSPAGSP 729
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 30.7 bits (66), Expect = 2.6
Identities = 27/113 (23%), Positives = 29/113 (25%), Gaps = 1/113 (0%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKX 886
PPS G + PP P P PA G RP +R
Sbjct: 290 PPSRGA----APPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPPPSRGA 345
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPP-RGXXPXQTSRPXRXPXP 1042
P P PPP P PP G P P P P
Sbjct: 346 PPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPPPPP 398
Score = 30.3 bits (65), Expect = 3.4
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 953 PPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVGR 1090
PPP+ A P RG P SR P P R T P P R
Sbjct: 289 PPPSRGAAPPPPSRGAPPPPPSR-GSAPPPPPARMGTAPPPPPPSR 333
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 29.9 bits (64), Expect = 4.5
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = +2
Query: 911 PHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTXXPXAPVGR 1090
P P +R R L PPP AP PP T+ P P + +P +
Sbjct: 411 PTPNRRRRRSLVQPPPPPPPAPLPPPPPPPPQPTTALPDPLQGPEVALHVEV--SSPPDQ 468
Query: 1091 PXTL 1102
P TL
Sbjct: 469 PFTL 472
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 29.5 bits (63), Expect = 5.9
Identities = 36/151 (23%), Positives = 43/151 (28%)
Frame = +2
Query: 578 NNXRHXPXXPAXLXPQRXXXPSXXXXKAXPXXXQAGRKPVGXRPPSNGTXXXXSXXPPPA 757
+N P P P P+ P KP PP+ T + PPA
Sbjct: 41 HNRTTTPTTPTTTTPPATTTPTKPT-NTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPA 99
Query: 758 XPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKXPIXAXTXPPHPXQRXXR 937
TP P T PA T P T P A T P P
Sbjct: 100 TTTPTKP----TTTTPPATTTPTKPTTTTPPGTTTPTKPTTTTP-PATTTPTKP------ 148
Query: 938 XLXXSPPPAAXAPXXQPPRGXXPXQTSRPXR 1030
+ PPA P P P T+ P +
Sbjct: 149 --TTTTPPATTTP--TKPTTTTPPATTTPTK 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,881,753
Number of Sequences: 59808
Number of extensions: 162948
Number of successful extensions: 463
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3940393390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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