Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L10
(1257 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.18
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.18
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.18
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.74
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 3.0
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 6.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.18
Identities = 31/132 (23%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Frame = +2
Query: 620 PQRXXXPSXXXXKAXPXXXQAGRKPVGXRPPSNGTXXXXSXXPPPAXPTPXXPXLXRXXT 799
P P K P +G P PP+ G+ PP PT P +
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 288
Query: 800 XXPAXXGXXXXTXEXXVXXXR---PXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAX 970
P G P P A T P P R R PP
Sbjct: 289 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 348
Query: 971 APXXQPPRGXXP 1006
P PP G P
Sbjct: 349 PPTGSPPTGRPP 360
Score = 31.1 bits (67), Expect = 1.7
Identities = 29/129 (22%), Positives = 34/129 (26%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKX 886
PP G+ PP P P R + P G P A
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP----------PPAGGSPP 290
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTX 1066
P A + PP P R PPP A G P + + P
Sbjct: 291 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 350
Query: 1067 XPXAPVGRP 1093
P GRP
Sbjct: 351 TGSPPTGRP 359
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.18
Identities = 31/132 (23%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Frame = +2
Query: 620 PQRXXXPSXXXXKAXPXXXQAGRKPVGXRPPSNGTXXXXSXXPPPAXPTPXXPXLXRXXT 799
P P K P +G P PP+ G+ PP PT P +
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 309
Query: 800 XXPAXXGXXXXTXEXXVXXXR---PXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAX 970
P G P P A T P P R R PP
Sbjct: 310 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 369
Query: 971 APXXQPPRGXXP 1006
P PP G P
Sbjct: 370 PPTGSPPTGRPP 381
Score = 31.1 bits (67), Expect = 1.7
Identities = 29/129 (22%), Positives = 34/129 (26%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKX 886
PP G+ PP P P R + P G P A
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP----------PPAGGSPP 311
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTX 1066
P A + PP P R PPP A G P + + P
Sbjct: 312 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 371
Query: 1067 XPXAPVGRP 1093
P GRP
Sbjct: 372 TGSPPTGRP 380
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.18
Identities = 31/132 (23%), Positives = 35/132 (26%), Gaps = 3/132 (2%)
Frame = +2
Query: 620 PQRXXXPSXXXXKAXPXXXQAGRKPVGXRPPSNGTXXXXSXXPPPAXPTPXXPXLXRXXT 799
P P K P +G P PP+ G+ PP PT P +
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGS 294
Query: 800 XXPAXXGXXXXTXEXXVXXXR---PXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAX 970
P G P P A T P P R R PP
Sbjct: 295 PPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 354
Query: 971 APXXQPPRGXXP 1006
P PP G P
Sbjct: 355 PPTGSPPTGRPP 366
Score = 31.1 bits (67), Expect = 1.7
Identities = 29/129 (22%), Positives = 34/129 (26%)
Frame = +2
Query: 707 PPSNGTXXXXSXXPPPAXPTPXXPXLXRXXTXXPAXXGXXXXTXEXXVXXXRPXAXTRKX 886
PP G+ PP P P R + P G P A
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP----------PPAGGSPP 296
Query: 887 PIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXPXXXRYXTX 1066
P A + PP P R PPP A G P + + P
Sbjct: 297 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPP 356
Query: 1067 XPXAPVGRP 1093
P GRP
Sbjct: 357 TGSPPTGRP 365
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.74
Identities = 23/77 (29%), Positives = 29/77 (37%)
Frame = +2
Query: 863 PXAXTRKXPIXAXTXPPHPXQRXXRXLXXSPPPAAXAPXXQPPRGXXPXQTSRPXRXPXP 1042
P RK + PP P R R +PPP + P +PP P RP R P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPR----TPPPRS-PPPRRPPM-TPPSPQRRPPRTPPS 177
Query: 1043 XXXRYXTXXPXAPVGRP 1093
R P +P+ P
Sbjct: 178 PEPRNPPRTPPSPIPPP 194
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGGXC 902
G G G G G G CGG GGG GG GG C
Sbjct: 87 GGGCGGGGGGCGGGGGCG--GGGGGCGGGGGGCGGGGGGCGGGGGGC 131
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGGXC 902
G G G G G G CGG GGG GG GG C
Sbjct: 80 GGGCGGGGGGCGGG--GGGCGGGGGCGGGGGGCGGGGGGCGGGGGGC 124
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 30.3 bits (65), Expect = 3.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGGXC 902
G G G G G G CGG GGG GG GG C
Sbjct: 87 GGGCGGGGGGCGGGGGCG--GGGGGCGGGGGGCGGGGGGCGGGGGGC 131
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGGXC 902
G G G G G G CGG GGG GG GG C
Sbjct: 80 GGGCGGGGGGCGGG--GGGCGGGGGCGGGGGGCGGGGGGCGGGGGGC 124
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 29.1 bits (62), Expect = 6.9
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 1042 GXGXSGWAAGLXXXXXAGRLXXGCXCGGRGGGX*XAXSALGGVGGXC 902
G G G G G G CGG GGG GG GG C
Sbjct: 126 GGGCGGGCGGGGGGGCGG--GGGGGCGGGGGGCGGGGGGCGGGGGGC 170
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,833
Number of Sequences: 27780
Number of extensions: 137741
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3495543430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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