Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L09
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   3.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   5.0  

>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 401 MLKLNEKWTESQWAPESKRTKRSAHR*QITIGSSYQLHELXGPVP 535
           ML  N +W  S     ++ T  +A      IGSSY +    G VP
Sbjct: 388 MLNNNSEWNNSMTMSSNQETPTAASCAVSRIGSSYGMSNNFGSVP 432


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -2

Query: 627 HFFXSRFRDIFXAEGTSTRSXHLQALEYGSPGTGPXNSCSW*LEPIVICHLCALL--FVR 454
           HF    F+  +   G +  S H   LE+GS      N  S     I IC    +L  F+ 
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRICWSLRVLASFLY 501

Query: 453 LLSG 442
           + SG
Sbjct: 502 IQSG 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,827
Number of Sequences: 5004
Number of extensions: 47561
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)