Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L09
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    30   3.0  
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    30   3.0  

>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 343 LKIRRSQPPTRLVRXKRGTDAKTQ*KMDRKSMGPRK*ANKEKRAQMTDYDRFKL 504
           + I+R    T L++     D K   K +  S G +K   +++RA + D+DRFK+
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKN--KWENSSWG-KKLIVQKRRASLNDFDRFKV 123


>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 343 LKIRRSQPPTRLVRXKRGTDAKTQ*KMDRKSMGPRK*ANKEKRAQMTDYDRFKL 504
           + I+R    T L++     D K   K +  S G +K   +++RA + D+DRFK+
Sbjct: 60  IDIKRVPKKTTLIKAMEEADVKN--KWENSSWG-KKLIVQKRRASLNDFDRFKV 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,339,630
Number of Sequences: 37544
Number of extensions: 341172
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)