Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L09
         (934 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)                   30   2.3  
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)
          Length = 198

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 551 LNTAVLAPVLLTRAAGNLN 495
           LNTAVL+PV   R+ GNLN
Sbjct: 121 LNTAVLSPVYFRRSVGNLN 139


>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +1

Query: 403 AKTQ*KMDRKSMGPRK*ANKEKRAQMTDYDRFKL 504
           A+ Q K ++ +   RK A ++KRA + D+DRFKL
Sbjct: 288 AQVQDKWEQTAWA-RKLAMRKKRATLNDFDRFKL 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,610,159
Number of Sequences: 59808
Number of extensions: 379099
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)