Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L09
         (934 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein ...    31   1.4  
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    29   5.8  

>At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein 3,
           putative / PSRP-3, putative similar to SP|P82412
           Plastid-specific 30S ribosomal protein 3, chloroplast
           precursor (PSRP-3) {Spinacia oleracea}; contains Pfam
           profile PF04839: Plastid and cyanobacterial ribosomal
           protein (PSRP-3 / Ycf65)
          Length = 183

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 PKLVATWVDWDPGQLGVTLGHQIPALNQTPIS-QKFRPQNTPFTAPYSSCEGKAW 395
           PK+V  +V W    +GV L H IP     P+S   F P+   +    +  E K W
Sbjct: 102 PKVVLKFV-WMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPW 155


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 280 ELP*ATRFPL*TKLPSHKNSALKIRRSQPPTRLVRXKRGTDAKTQ*KMDRKSMGPRK*AN 459
           + P   R  +  K  S  +  + I R      L+      D K   K ++ S G RK   
Sbjct: 39  DAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKN--KWEKSSWG-RKLIV 95

Query: 460 KEKRAQMTDYDRFKL 504
           +++RA + D+DRFK+
Sbjct: 96  QKRRANLNDFDRFKI 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,300
Number of Sequences: 28952
Number of extensions: 261388
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)