Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L08
(929 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79; Eukary... 106 7e-22
UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88; ... 104 3e-21
UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44; Fungi... 103 7e-21
UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genom... 93 7e-18
UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiell... 56 2e-06
UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1; ... 55 3e-06
UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=... 54 5e-06
UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba h... 49 2e-04
UniRef50_Q5KA45 Cluster: Putative uncharacterized protein; n=1; ... 42 0.017
UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q8TJC7 Cluster: Rhomboid protein; n=3; Methanosarcina|R... 35 2.6
>UniRef50_P48166 Cluster: 60S ribosomal protein L44; n=79;
Eukaryota|Rep: 60S ribosomal protein L44 -
Caenorhabditis elegans
Length = 105
Score = 106 bits (255), Expect = 7e-22
Identities = 50/105 (47%), Positives = 63/105 (60%)
Frame = +3
Query: 99 MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLPRXRXRYDRKQQGYGGQSKPIFXXX 278
MV VPK RR + +T K + + R RYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 279 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>UniRef50_Q969Q0 Cluster: 60S ribosomal protein L36a-like; n=88;
Eukaryota|Rep: 60S ribosomal protein L36a-like - Homo
sapiens (Human)
Length = 106
Score = 104 bits (250), Expect = 3e-21
Identities = 56/108 (51%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Frame = +3
Query: 99 MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTL-PRXRXRYDRKQQGYGGQSKPIFXX 275
MV VPK RR + +K GK +L + R RYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKK--GKDSLYAQGRRRYDRKQSGYGGQTKPIFRK 58
Query: 276 XXXXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 59 KAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_P83881 Cluster: 60S ribosomal protein L36a; n=44;
Fungi/Metazoa group|Rep: 60S ribosomal protein L36a -
Homo sapiens (Human)
Length = 106
Score = 103 bits (247), Expect = 7e-21
Identities = 55/108 (50%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Frame = +3
Query: 99 MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTL-PRXRXRYDRKQQGYGGQSKPIFXX 275
MV VPK RR + +K GK +L + + RYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKK--GKDSLYAQGKRRYDRKQSGYGGQTKPIFRK 58
Query: 276 XXXXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 59 KAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>UniRef50_A7P2V5 Cluster: Chromosome chr1 scaffold_5, whole genome
shotgun sequence; n=9; Eukaryota|Rep: Chromosome chr1
scaffold_5, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 151
Score = 93.5 bits (222), Expect = 7e-18
Identities = 47/100 (47%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +3
Query: 102 VXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLP-RXRXRYDRKQQGYGGQSKPIFXXX 278
V VPK ++ Y Q +GK +L + + RYDRKQ GYGGQ+KP+F
Sbjct: 48 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 107
Query: 279 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 398
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 108 AKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 147
>UniRef50_Q3LWA2 Cluster: Ribosomal protein L44; n=1; Bigelowiella
natans|Rep: Ribosomal protein L44 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 99
Score = 55.6 bits (128), Expect = 2e-06
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 189 GKGTL-PRXRXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKH 365
GK +L + + RYDRKQQGYGGQ+KP+F ++L C CK +LKR K
Sbjct: 29 GKASLNAQGKRRYDRKQQGYGGQTKPVFRKQVKNTKKPSIKLSCEICKKEFIKSLKRTKR 88
Query: 366 FEL 374
F++
Sbjct: 89 FQI 91
>UniRef50_A3BKG6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 89
Score = 54.8 bits (126), Expect = 3e-06
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 297 IVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 398
IVL+L+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 52 IVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 85
>UniRef50_A2DAI6 Cluster: 60S ribosomal protein L44, putative; n=1;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L44,
putative - Trichomonas vaginalis G3
Length = 104
Score = 54.0 bits (124), Expect = 5e-06
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = +3
Query: 213 RXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKR 392
R RYDRKQ+G+GG+ KPI I LR C CK + L R + FE +KK+
Sbjct: 38 RRRYDRKQKGFGGRVKPILRRSKKTSKKISLRFTCQSCKKATMYCLGRLRKFEWTVEKKK 97
Query: 393 K 395
K
Sbjct: 98 K 98
>UniRef50_O15576 Cluster: Ribosomal protein L44; n=1; Entamoeba
histolytica|Rep: Ribosomal protein L44 - Entamoeba
histolytica
Length = 80
Score = 48.8 bits (111), Expect = 2e-04
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 177 QKVQGKGTLP-RXRXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALK 353
Q +GK +L + + RYDRKQQG+GGQ+KP+F + ++EC CK+ +
Sbjct: 9 QYKKGKDSLHVQGKRRYDRKQQGFGGQTKPVFKKKAKQQRRL-FKIECTKCKIAQSLRES 67
Query: 354 RC 359
C
Sbjct: 68 TC 69
>UniRef50_Q5KA45 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 147
Score = 42.3 bits (95), Expect = 0.017
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = +1
Query: 241 VTVVSPNPSSKRRQKPLRKLCSVLSVLIAR*DHRLH*RDASTLSLVVTR 387
VTVV P+ SS RR +P R+L SV S L AR DAST S VVTR
Sbjct: 54 VTVVRPSLSSTRRLRPPRRLSSVSSALSARPSTNSPSSDASTSSSVVTR 102
>UniRef50_A3BKG7 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 76
Score = 36.3 bits (80), Expect = 1.1
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 345 ALKRCKHFELGGDKKRKG 398
+++RCKHFE+GGDKK KG
Sbjct: 55 SVQRCKHFEIGGDKKGKG 72
>UniRef50_Q8TJC7 Cluster: Rhomboid protein; n=3; Methanosarcina|Rep:
Rhomboid protein - Methanosarcina acetivorans
Length = 226
Score = 35.1 bits (77), Expect = 2.6
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 298 IFLVVFAFFLKM--GLD*PP*PCCXXXXXXXXLGSVPXPWTFCTVIXLCT-LWHLHFLQY 128
IFL V +FFL+M G+ P + PWT T I L T LWHL F
Sbjct: 35 IFLCVISFFLEMLPGIG----PLYISAFQFDPGSLLARPWTLVTYIFLHTGLWHLFFNML 90
Query: 127 XLRCFGT 107
L FGT
Sbjct: 91 VLYFFGT 97
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,478,010
Number of Sequences: 1657284
Number of extensions: 5718931
Number of successful extensions: 12240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12234
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85670899699
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -