Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L08
         (929 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)              114   8e-26
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           62   5e-10
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score =  114 bits (275), Expect = 8e-26
 Identities = 56/108 (51%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = +3

Query: 93  SKMVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTL-PRXRXRYDRKQQGYGGQSKPIF 269
           S +V VPKQR+ +               Q   GK +L  + + RYDRKQ G+GGQ+KP+F
Sbjct: 6   SPVVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVF 65

Query: 270 XXXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
                    IVLR+EC  CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 66  HKKAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 62.5 bits (145), Expect = 5e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +3

Query: 297 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 395
           IVLR+EC  CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7   IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 118  SAGRTAKNVNATKYTRXSQYKKSKXKARCPGXEXVMIVNSRVTVVSPNPSSKRRQKPLRK 297
            SA +   +   T  T+ S+Y + K   +C G    +      T  +P  S K+  K   K
Sbjct: 1410 SATQEPPSTQVTSVTQESRYSQKKKGGKCGGKSAKVSPKPTATPATPTQSGKQSAKSPVK 1469

Query: 298  LCSV 309
            L +V
Sbjct: 1470 LLTV 1473


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 157 YTRXSQYKKSKXKARCPGXEXVMIVNSRVTVVSPNPS 267
           YT  +QY   +  AR P    V  VN  VTV+SP  S
Sbjct: 473 YTGLNQYYSPRQMARGPIQSVVYNVNKPVTVLSPRMS 509


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,163
Number of Sequences: 59808
Number of extensions: 194255
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)