Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L08
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   106   2e-23
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   106   2e-23

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/105 (47%), Positives = 63/105 (60%)
 Frame = +3

Query: 99  MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLPRXRXRYDRKQQGYGGQSKPIFXXX 278
           MV VPK RR +            +T  K   +    + R RYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 279 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  106 bits (255), Expect = 2e-23
 Identities = 50/105 (47%), Positives = 63/105 (60%)
 Frame = +3

Query: 99  MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLPRXRXRYDRKQQGYGGQSKPIFXXX 278
           MV VPK RR +            +T  K   +    + R RYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 279 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 413
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,300
Number of Sequences: 27780
Number of extensions: 146367
Number of successful extensions: 360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)