Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L08
         (929 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)      95   8e-20
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...    95   8e-20
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    29   5.8  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 47/101 (46%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
 Frame = +3

Query: 99  MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLP-RXRXRYDRKQQGYGGQSKPIFXX 275
           MV +PK +  Y               Q  +GK +L  + + RYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 276 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 398
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 47/101 (46%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
 Frame = +3

Query: 99  MVXVPKQRRXYXXXXXXXXXXXXITVQKVQGKGTLP-RXRXRYDRKQQGYGGQSKPIFXX 275
           MV +PK +  Y               Q  +GK +L  + + RYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 276 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 398
                  IVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 391 LFLSPPSSKCLHLFNATCDLTLQSAHSRRST 299
           L+ SPPSS C      +CDL L S  S  S+
Sbjct: 9   LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,773
Number of Sequences: 28952
Number of extensions: 132409
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)