Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L07
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.031
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.041
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.054
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.094
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 8.2
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.031
Identities = 23/63 (36%), Positives = 23/63 (36%)
Frame = -3
Query: 849 GXXXGXEXXRXXRGXXXXGGXXGRXGXGGGRXAXXVXGRGXXRGXXXXXRGXXSXRGGXG 670
G G R RG G GR G GGGR GRG RG G RGG
Sbjct: 6 GSRGGRGGSRGGRG----GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSS 61
Query: 669 XXR 661
R
Sbjct: 62 GGR 64
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/58 (34%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Frame = -1
Query: 875 GXXGXXXGXGXGGGXRXGXXXEXGGGXEXXXEGGXXXGGXQRXXXGG-GXXXGGXXGG 705
G G G G GG R G GG GG G R GG GG GG
Sbjct: 17 GRGGFNGGRGGFGGGRGGAR----GGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = -1
Query: 875 GXXGXXXGXGXGGGXRXGXXXEXGGGXEXXXEGGXXXGGXQRXXXGGGXXXGGXXGGXEG 696
G G G G G G GGG GG GG + G G GG G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGG--RGGARGGRGGRGGARGGRGGSSGG 63
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.041
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +1
Query: 697 PSXPPXXPPXXXPP-PXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXP 867
PS PP PP P P PP PPS + P P PP P P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +3
Query: 705 SXXLPPXXXPAPXPPPLXAPXXXPXFXXXLPPXXXLSXXAXPPPPXXXXP 854
S LPP AP PPP P P PP + PP P P
Sbjct: 350 SIPLPPQGRSAPPPPP---PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Frame = +1
Query: 685 GGXLPSXPPXX-PPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXX 861
G P+ PP PP P PPS S PP P P P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 862 XP 867
P
Sbjct: 457 PP 458
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/61 (31%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Frame = +1
Query: 700 SXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXP--PPXSXXXPXLXPPPXPXPXXXPXX 873
S PP P PP P PPS P PP P P P P P
Sbjct: 413 STPPVPTPPSLPPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 874 P 876
P
Sbjct: 471 P 471
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Frame = +1
Query: 658 LSXXXXTASGGXLPSXPPXXPPXXXPP--PXXXRXXPPXXXPPSXXXSXPPPXSXXXP 825
L+ T + P PP P P P PP PPS PP S P
Sbjct: 217 LNESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Frame = +1
Query: 709 PXXPPXXXPPPXXXRXXP-PXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPXXP 876
P PP P P PPS S PP P P P P P P
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/55 (29%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Frame = +1
Query: 700 SXPPXXPPXXXPPPXXX---RXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXP 855
S PP PP + PP PPS PP PP P P
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.054
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +1
Query: 706 PPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXP----PPXPXP 855
PP PP PP P PPS P P + P P PP P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Frame = +1
Query: 694 LPSX--PPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXP 867
LPS PP P PP PP S S PPP P P P P P
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP--VPAPSSEIPSIPAPSGAP 1083
Query: 868 XXP 876
P
Sbjct: 1084 PVP 1086
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Frame = +1
Query: 682 SGGXLPSXPPXXPPXXXPPPXXXRXX--PPXXXPPSXXXSXPPPXSXXXPXLXPPPXP 849
+ G P+ PP PP PP PPS S P S P PP P
Sbjct: 958 ASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVP 1015
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = +1
Query: 706 PPXXPPXXXPP-PXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXP---PPXPXP 855
PP P PP P PP P S P P + P P PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Frame = +1
Query: 706 PPXXPPXXXPP-PXXXRXXPPXXXPPSXXXSXPPPXS---XXXPXLXPPPXPXPXXXPXX 873
PP P PP P PP P P P P + PP P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 874 P 876
P
Sbjct: 1143 P 1143
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +1
Query: 694 LPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPXX 873
+P PP P P PP S PP P + PP P P P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP--VPKPSVAAPPVPAPSGAPPV 1161
Query: 874 P 876
P
Sbjct: 1162 P 1162
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Frame = +1
Query: 706 PPXXPPXXXPPP-XXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXP----PPXPXPXXXPX 870
PP P PP PP P P P S P P PP P P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 871 XP 876
P
Sbjct: 1200 VP 1201
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Frame = +1
Query: 679 ASGGXLPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXP----PPX 846
+S G + PP P P P PS P P P P PP
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV 1114
Query: 847 PXPXXXPXXP 876
P P P P
Sbjct: 1115 PAPSGAPPVP 1124
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Frame = +1
Query: 706 PPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXP----PPXPXP 855
PP P PP P PS PP S P P PP P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +1
Query: 694 LPSXPPXXP-PXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPX 870
+PS P P P PP P PP S P S P PP P P P
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP-SIPAPS-GAPPVPAPSGIPP 1093
Query: 871 XP 876
P
Sbjct: 1094 VP 1095
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +1
Query: 706 PPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXP 867
P P PP P PPS P P S P + PP P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP-SVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 706 PPXXPPXXXPP-PXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXP 855
PP PP PP P PP P + P P S P + P P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP-SSEAPSVSTPRSSVP 1257
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/49 (26%), Positives = 16/49 (32%)
Frame = +2
Query: 731 PRPXTXXAXRPPPXPXLPXXPPXXXXPLXXRXXSXPXXXPXPXXXPPXP 877
P P + P P +P PP P + P P PP P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.094
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +1
Query: 685 GGXLPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXP 855
GG P+ P PP + P PP S PPP S PP P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPM--SVPPPPSAPPMPAGPPSAPPP 1733
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 721 PXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPXXP 876
P PP PP P+ PPP S P PP P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +1
Query: 706 PPXXPPXXXPPPXXXRXXPPXXXP-PSXXXSXPPPXSXXXPXLXPPPXPXP 855
PP PPP PP P P+ S PPP P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP---PLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +1
Query: 706 PPXXPPXXXPPPXXXRXXPPXXXP-PSXXXSXPPPXSXXXPXLXPPPXP-XPXXXPXXP 876
P PP PP PP P S PPP P PP P P P P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/53 (28%), Positives = 15/53 (28%)
Frame = +1
Query: 718 PPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPXXP 876
P PP PP PP P P S PP P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 718 PPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXPXXXPXXP 876
PP PP P PP + P P S P P P P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +1
Query: 697 PSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSX--PPPXSXXXPXLXPPPXPXPXXXPX 870
PS PP P P P P PP+ + PP + P PP P P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP---MPPKVPP 203
Query: 871 XP 876
P
Sbjct: 204 PP 205
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 679 ASGGXLPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPP 843
AS +PS P P PP + P PPS S P P + PPP
Sbjct: 155 ASAPPIPSKAPPIPSSLPPP---AQPAAPVKSPPS-APSLPSAVPPMPPKVPPPP 205
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 717 PPXXXPAPXPPPLXAPXXXPXFXXXLPPXXXLSXXAXPPPPXXXXPP 857
PP AP P P P PP A PP P PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 717 PPXXXPAPXPPPLXAPXXXPXFXXXLPPXXXLSXXAXPPPPXXXXP 854
PP P P AP P LP PPPP P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +1
Query: 694 LPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXP 855
L S PP P P P P P PPP PPP P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +3
Query: 717 PPXXXPAPXPPPLXAPXXXPXFXXXLPPXXXLSXXAXPPPPXXXXPP 857
P P P P P+ P P PP PPP PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Frame = +1
Query: 709 PXXPPXXXPPPXXXRXXPPXXXPP-SXXXSXPPPXSXXXP 825
P P PPP PP PP + PPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 694 LPSXPPXXPPXXXPPPXXXRXXPPXXXPPSXXXSXPPP 807
+ S PP PP PPP PP PPS PPP
Sbjct: 1 MASLPPGNPP---PPP-----PPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 760 PPXXXPPSXXXSXPPPXSXXXPXLXPPPXPXP 855
PP PP PPP P PPP P P
Sbjct: 5 PPGNPPP------PPPPPGFEPPSQPPPPPPP 30
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/60 (36%), Positives = 22/60 (36%)
Frame = -1
Query: 875 GXXGXXXGXGXGGGXRXGXXXEXGGGXEXXXEGGXXXGGXQRXXXGGGXXXGGXXGGXEG 696
G G G G G G G GGG EGG GG G G GG GG G
Sbjct: 205 GGFGGFGGFG-GEGHHHGGHGGFGGGP-GGFEGG--PGGFGGGPGGFGGGLGGFGGGPGG 260
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Frame = +1
Query: 697 PSXPPXXPPXXXPP-PXXXRXXPPXXXPPSXXXSXPPPXSXXXPXL-----XPPPXPXPX 858
P PP P P P PP P S S P S L PPP P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPS 280
Query: 859 XXPXXP 876
P P
Sbjct: 281 QPPRPP 286
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = -1
Query: 866 GXXXGXGXGGGXRXGXXXEXGGGXEXXXEGGXXXGGXQRXXXGGG 732
G G G GG + GG GG GG GGG
Sbjct: 136 GGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGG 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,622
Number of Sequences: 5004
Number of extensions: 25557
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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