Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L03
         (1071 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5GSG8 Cluster: Putative uncharacterized protein SynRCC...    36   2.4  
UniRef50_Q0DCG7 Cluster: Os06g0331500 protein; n=1; Oryza sativa...    34   7.2  

>UniRef50_A5GSG8 Cluster: Putative uncharacterized protein
           SynRCC307_0924; n=1; Synechococcus sp. RCC307|Rep:
           Putative uncharacterized protein SynRCC307_0924 -
           Synechococcus sp. (strain RCC307)
          Length = 1387

 Score = 35.5 bits (78), Expect = 2.4
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
 Frame = -2

Query: 362 QGQAKRESRLSXVRLQGSAGQRPXLDLSCKLT--------*TADA--VQEAPQXGXGRTR 213
           +G   R+++L+ +R+Q S G+RP LDL  +L           A+A   Q +     G  R
Sbjct: 180 KGLGPRQTQLA-MRVQNSWGRRPALDLRLQLRRLSLPALGSLAEAWPSQISSGEASGSLR 238

Query: 212 LNRXG--WR---PQLGRRAREGEMRAPRSRSFCKSLGLQIXPPHYLWIXQRHEATS 60
           LNR G  WR   P   ++ R G   +P+ R  C    L++    + W  +R +A +
Sbjct: 239 LNRQGQQWRCQGPVQLKQLRIGAFSSPQQRWRCGGTSLELKTSPWRWADRRGDAAA 294


>UniRef50_Q0DCG7 Cluster: Os06g0331500 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os06g0331500 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 140

 Score = 33.9 bits (74), Expect = 7.2
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 507 PXPNTLPPSAGLXPFYLXRXLVPRXLVXXSGXSAAWW 617
           P   +LPP  G  PF   R      LV  SG SAAWW
Sbjct: 78  PLALSLPPPVGGGPFPPRRGASTAPLVAISGRSAAWW 114


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,391,142
Number of Sequences: 1657284
Number of extensions: 8406498
Number of successful extensions: 14386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14103
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 103274886922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)