Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L02
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   114   2e-26
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   109   4e-25
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    44   3e-05
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    31   0.27 
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    27   4.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  

>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  114 bits (274), Expect = 2e-26
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
 Frame = +1

Query: 199 VNLGVGAXSAXNGKPWVLPIVRKLEKQLAAXETLLHEYLPVLGLEQFCNASVAMLLGEDS 378
           VN+ VGA     GKPW+LP V+K  K +    +  HEYLP+ GL +F  A+  +L   + 
Sbjct: 33  VNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNP 92

Query: 379 PAIAAGKAFGVQVLSGTGGLRVGAEFLNK-HLKYD--TFYYSTPTWENHHLVFVNSGFTK 549
             ++  +   +Q +SGTG   + A F+   ++K+     Y S PTW  H  ++   G T 
Sbjct: 93  HLLSEDRVASMQSVSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTV 152

Query: 550 PRLVPXLGREDQGHXLRXFHRRXQERSENAVILLHACAHNPTGIXPTXEQWVXIXDVMEE 729
               P    +++           +   E ++ LLHACAHNPTGI PT EQW+ I + +  
Sbjct: 153 D-TYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLS 211

Query: 730 R 732
           R
Sbjct: 212 R 212



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = +2

Query: 557 SYRYWDAKTRGIXFXGFIEXLKSARRMPSY---CCTHXXXXXXXXXXXXNSG*XXLMSWR 727
           +Y YWDAK R   + G +  +KSA     +    C H             S    L+S +
Sbjct: 154 TYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRK 213

Query: 728 SASCXRFFDXAYQGFASGDLXXXPWAXXXF 817
                  FD AYQGFASGDL    WA   F
Sbjct: 214 HLVV---FDIAYQGFASGDLNRDSWALNEF 240


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  109 bits (263), Expect = 4e-25
 Identities = 62/178 (34%), Positives = 89/178 (50%)
 Frame = +1

Query: 199 VNLGVGAXSAXNGKPWVLPIVRKLEKQLAAXETLLHEYLPVLGLEQFCNASVAMLLGEDS 378
           +NLG G      GKP+VLP VR+ E +L + + L  EY P+ G+  F   +  +  G+  
Sbjct: 67  MNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAPITGIPSFRVQATKLAYGDVY 125

Query: 379 PAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRL 558
            +I   +    Q +SGTG L + A FL       T Y S PTW NH  VF  +G T  + 
Sbjct: 126 ESIK-DRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTV-KS 183

Query: 559 VPXLGREDQGHXLRXFHRRXQERSENAVILLHACAHNPTGIXPTXEQWVXIXDVMEER 732
                   +G  ++          + ++ILLHACAHNPTG+ PT  QW  I   M+++
Sbjct: 184 YKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDDILKTMQKK 241



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +2

Query: 557 SYRYWDAKTRGIXFXGFIEXLKSARR---MPSYCCTHXXXXXXXXXXXXNSG*XXLMSWR 727
           SY+Y+D  TRG+   G +  L SA     +  + C H            +     L + +
Sbjct: 183 SYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDD---ILKTMQ 239

Query: 728 SASCXRFFDXAYQGFASGDLXXXPWAXXXF 817
             +     D AYQGFASGD     +A   F
Sbjct: 240 KKNHFALLDMAYQGFASGDFARDAYATRLF 269


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +1

Query: 244 WVLPIVRKLEKQLAAXETLLHEYLPVLGLEQFCNASVAML-LGEDSPAIAAGKAFGVQVL 420
           W   +VR L K+L   + L HEY P   ++     S+A L L  D+P I AG    V ++
Sbjct: 106 WSQQVVRVLVKRLNISDLLYHEYKPKFEVDTLNATSLASLPLDIDAPCIRAGLEPEVALI 165

Query: 421 ---SGTGGLRVGAEFLNKHLKYDTFY-YSTPTWENH 516
              SG+ G+     FL K  KY   Y Y TP + NH
Sbjct: 166 NHSSGSTGVPKSMPFLMK--KYALGYDYGTPEFMNH 199


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 341 VMRLWLCSLVRIVLPSPLEKLLVCKSCPGLVVCASAQSSSTSILNMIHSTTPRL 502
           ++  ++CS  ++ LP+PL   L C S     V     +   S LN++ +  P L
Sbjct: 393 ILSAFICSPPQLPLPNPLRMYLPCPSLNSTEVSVITLAPQHSFLNIVINLNPAL 446


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 187 KXPQXKRXFNKNTAXGGPXXTPXKREA 107
           + P   R + KN+  GGP  +  KREA
Sbjct: 52  RRPSVNRAWQKNSTSGGPSVSLEKREA 78


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 362  SLVRIVLPSPLEK--LLVCKSCPGLVVCASAQSSSTSILNMIHST 490
            S+++ VL  P+    LL+CK C  ++ C  + +    ++ ++  +
Sbjct: 958  SVLKRVLDGPMRTKFLLLCKRCKAVLCCRVSPAQKADVVQLVRES 1002


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 398 KLLVCKSCPGLVVCASAQSSSTSILNMIHSTT 493
           ++LVC++  GL  C   ++   S + M+ STT
Sbjct: 890 QVLVCENLVGLFSCVFVKNKLQSKIRMLQSTT 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,799
Number of Sequences: 5004
Number of extensions: 45443
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)