Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_L02
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 150 2e-36
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 109 4e-24
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 73 2e-13
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 29 3.5
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 6.2
06_03_0644 - 23107179-23107607,23107661-23107843 28 8.1
05_05_0392 + 24629528-24630442 28 8.1
01_07_0295 - 42577779-42578330 28 8.1
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 150 bits (363), Expect = 2e-36
Identities = 78/182 (42%), Positives = 97/182 (53%)
Frame = +1
Query: 199 VNLGVGAXSAXNGKPWVLPIVRKLEKQLAAXETLLHEYLPVLGLEQFCNASVAMLLGEDS 378
VNLGVGA GKP VL +VR+ E+ L + + EYLP+ GL F S ++ G DS
Sbjct: 34 VNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGADS 93
Query: 379 PAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRL 558
PAI + VQ LSGTG LRVG EFL +H T Y PTW NH VF +G T R
Sbjct: 94 PAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYIPQPTWGNHPKVFTLAGLT-VRS 152
Query: 559 VPXLGREDQGHXLRXFHRRXQERSENAVILLHACAHNPTGIXPTXEQWVXIXDVMEERXL 738
+G + A++LLHACAHNPTG+ PT +QW I +M + L
Sbjct: 153 YRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLDQWEQIRQLMRSKAL 212
Query: 739 XP 744
P
Sbjct: 213 LP 214
Score = 48.4 bits (110), Expect = 7e-06
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 533 TLVSRSPXSYRYWDAKTRGIXFXGFIEXLKSARR---MPSYCCTHXXXXXXXXXXXXNSG 703
TL + SYRY+D TRG+ F G +E L SA + + C H
Sbjct: 144 TLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLDQWEQI 203
Query: 704 *XXLMSWRSASCXRFFDXAYQGFASGDL 787
LM RS + FFD AYQGFASG L
Sbjct: 204 -RQLM--RSKALLPFFDSAYQGFASGSL 228
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 109 bits (261), Expect = 4e-24
Identities = 60/168 (35%), Positives = 88/168 (52%)
Frame = +1
Query: 199 VNLGVGAXSAXNGKPWVLPIVRKLEKQLAAXETLLHEYLPVLGLEQFCNASVAMLLGEDS 378
VN+GVGA +GKP VL VR+ E+++A + EYLP+ G + S+ + GE+
Sbjct: 60 VNVGVGAYRDDSGKPVVLECVREAERRIAGSMNM--EYLPMGGSIKMIEESLKLAYGENC 117
Query: 379 PAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRL 558
I + VQ LSGTG R+ A+F + L Y TPTW NHH ++ ++ + +
Sbjct: 118 EFIKDKRIAAVQALSGTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVPQ-KT 176
Query: 559 VPXLGREDQGHXLRXFHRRXQERSENAVILLHACAHNPTGIXPTXEQW 702
E +G + + + LLHACAHNPTG+ P+ EQW
Sbjct: 177 FTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHACAHNPTGVDPSEEQW 224
Score = 33.1 bits (72), Expect = 0.29
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 557 SYRYWDAKTRGIXFXGFIEXLKSARRMPSYCCTHXXXXXXXXXXXXNSG*XXLM-SWRSA 733
++ Y+ ++RG+ F G ++ +K+A S+ H + ++
Sbjct: 176 TFTYYHPESRGLDFAGLMDDIKNAPD-GSFFLLHACAHNPTGVDPSEEQWREISHQFKVK 234
Query: 734 SCXRFFDXAYQGFASGD 784
FFD AYQGFASGD
Sbjct: 235 KHFPFFDMAYQGFASGD 251
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/95 (37%), Positives = 48/95 (50%)
Frame = +1
Query: 418 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRLVPXLGREDQGHXL 597
LSGTG R+ A+F + L Y TPTW NHH ++ ++ + R E +G
Sbjct: 68 LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126
Query: 598 RXFHRRXQERSENAVILLHACAHNPTGIXPTXEQW 702
+ + LLHACAHNPTG+ PT EQW
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQW 161
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 557 SYRYWDAKTRGIXFXGFIEXLKSARRMPSYCCTHXXXXXXXXXXXXNSG*XXLMSWRSAS 736
++ Y+ ++RG+ F G ++ +K+A + ++ +
Sbjct: 113 TFTYYHPESRGLDFAGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQWREISYQFKIKN 172
Query: 737 CXRFFDXAYQGFASGD 784
FFD AYQGFASGD
Sbjct: 173 HFPFFDMAYQGFASGD 188
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 409 VQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVN 534
VQ L +GG+++GA LN + + F+ T T + VF+N
Sbjct: 353 VQALEASGGVKIGAG-LNVAYQREVFFIRTSTSNQIYAVFLN 393
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 343 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFL--NKHL--KYDTFY----YST 498
+ + A+ GE P +A G G + +G + +G + +++ +YD F+ YS+
Sbjct: 2 SGAAAIATGEGGPLVAVGLGGGNDLHNGDAAVVLGKTWCWASRYPGDQYDRFWWQLGYSS 61
Query: 499 PTWEN 513
PTW+N
Sbjct: 62 PTWKN 66
>06_03_0644 - 23107179-23107607,23107661-23107843
Length = 203
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 383 AGLSSPRSIATDALQNCSRPNTGRYSCSKVSXAAS 279
AG+++ + AT C RP TG C + + A+
Sbjct: 158 AGMAAGKDAATGVRTRCRRPETGDDGCERTAVVAA 192
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 452 SAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIAT 351
S P R+PPVP + C +A P +SP S T
Sbjct: 217 SGPQRKPPVPPRPC-GRASPRRAQETNSPASSTT 249
>01_07_0295 - 42577779-42578330
Length = 183
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 676 LWDCGRMRAAV*RHSPSALEXFDETXEVYAPGLRVPVXVRXGAS 545
LW C R AA R P+ + D V +P P R G S
Sbjct: 31 LWRCRRRSAAANRQQPAVVVASDAELTVQSPKKPAPARRRGGGS 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,342
Number of Sequences: 37544
Number of extensions: 349514
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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