Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L02
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)               143   1e-34
SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)           32   0.51 
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_57036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)            28   8.3  
SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)                      28   8.3  
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)                  28   8.3  
SB_7718| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)                 28   8.3  

>SB_8675| Best HMM Match : Aminotran_1_2 (HMM E-Value=0)
          Length = 512

 Score =  143 bits (347), Expect = 1e-34
 Identities = 74/174 (42%), Positives = 100/174 (57%), Gaps = 3/174 (1%)
 Frame = +1

Query: 232 NGKPWVLPIVRKLEKQLA---AXETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGKA 402
           +GKPWVLP+V K+E QLA   A  TL HEYL + GL QF +A+  +LLG D PAIA  + 
Sbjct: 110 DGKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNRV 169

Query: 403 FGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRLVPXLGRED 582
            G+Q +SGTG + +G +FL +     T Y S PTW NH       GFT  R       E 
Sbjct: 170 CGIQSISGTGSVFLGLKFLYQFYNCKTAYISKPTWGNHLKTLKAVGFTDIREYRYYKAET 229

Query: 583 QGHXLRXFHRRXQERSENAVILLHACAHNPTGIXPTXEQWVXIXDVMEERXLXP 744
                       ++  E ++I+LH CAHNPTG+  + +QW+ I D+M++R L P
Sbjct: 230 CSVDFDAMWEDLEKAPEGSIIVLHECAHNPTGVDLSHDQWIKIADIMKKRQLFP 283



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
 Frame = +1

Query: 199 VNLGVGAXSAXNGKPWVLPIVRKLEKQLA---AXETLLHEYLPVLGLEQFCNASVAMLLG 369
           +NLGVGA    +GKPWVLP+V K+E QLA   A  TL HEYL + GL QF +A+  +LLG
Sbjct: 34  INLGVGAYRDNDGKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLG 93

Query: 370 EDSPAIAAGK 399
            D PAIA  +
Sbjct: 94  GDHPAIAQNR 103



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
 Frame = +2

Query: 560 YRYWDAKTRGIXFXGFIEXLKSARRMPSYCCTHXXXXXXXXXXXXNSG*XXLMS-WRSAS 736
           YRY+ A+T  + F    E L+ A    S    H            +     +    +   
Sbjct: 222 YRYYKAETCSVDFDAMWEDLEKAPE-GSIIVLHECAHNPTGVDLSHDQWIKIADIMKKRQ 280

Query: 737 CXRFFDXAYQGFASGDLXXXPWAXXXFXXXXF 832
              +FD AYQGFASGD+    WA   F    F
Sbjct: 281 LFPYFDTAYQGFASGDVDEDAWAVRYFASQGF 312


>SB_51759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
 Frame = +1

Query: 232 NGKPWVLPIVRKLEKQLA---AXETLLHEYLPVLGLEQFCNASVAMLLGEDSPAIAAGK 399
           +GKPWVLP+V K+E QLA   A  TL HEYL + GL QF +A+  +LLG D PAIA  +
Sbjct: 6   DGKPWVLPVVSKVETQLAQGIADGTLNHEYLGIDGLRQFSDAACKLLLGGDHPAIAQNR 64


>SB_57277| Best HMM Match : Phage_T7_Capsid (HMM E-Value=6.7)
          Length = 130

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +1

Query: 199 VNLGVGAXSAXNGKPWVLPIVRK 267
           +NLGVGA     GKP+VLP V+K
Sbjct: 79  MNLGVGAYRDDTGKPYVLPSVKK 101


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 465 LVEELCADAQTTSPGQDLHTKSFSSGDGRTILTKEHSHRRITKLLQT 325
           L+E    DA   S  +D H+++   GD R I  KE   +++   +++
Sbjct: 391 LLENKTVDADVRSASRDSHSRTSEGGDKRDIRAKETGSQKVKSKIRS 437


>SB_23687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 504 CRRGVVECIIFKMLVEELCADAQ--TTSPGQDLHTKSFSSGDGRTILTKE 361
           C      C++ K  VE L  D Q  T +P +D+     S+GD +T+ T+E
Sbjct: 134 CNGNSPRCLLAK--VESLTIDDQIVTITPEEDIKISRISNGDDQTVETRE 181


>SB_56908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 504 CRRGVVECIIFKMLVEELCADAQ--TTSPGQDLHTKSFSSGDGRTILTKEHSHRRITKLL 331
           C      C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E+ +     LL
Sbjct: 618 CNGNSPRCLLPK--VESLTIDDQIVTITPEEDIRLSRIANGDDQTVETRENGNEERKCLL 675



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 486 ECIIFKMLVEELCADAQ--TTSPGQDLHTKSFSSGDGRTILTKEHSH 352
           +C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E+ +
Sbjct: 672 KCLLPK--VESLTIDDQIVTITPEEDIRLSRIANGDDQTVETRENGN 716


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 388 AAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRLVPX 567
           A  + FG++V    GGL   A  L+   +  T  YS P  E +HL+       + R +  
Sbjct: 376 ARQRRFGIRVFLPLGGLPTKANELHLPRREYTVPYSVPNSEPYHLLEQGETLDRQRTMSL 435

Query: 568 LG 573
            G
Sbjct: 436 TG 437


>SB_57036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = -1

Query: 793 SVQVAXREPLV-RXVEEXXTTXAPP*HQXXSPTVPWWGXCLWDCGRMRAAV*RHSPSALE 617
           +V V    PL+ +  E+  TT         S    W     WDC    ++V     S  E
Sbjct: 55  AVLVKPNNPLMEQKTEKKYTTKRDLRESSLSSLGSWLTTFNWDCVLNLSSVNEKVHSFYE 114

Query: 616 XFDETXEVYAPGLRVPV 566
            F +  E++ P  R+PV
Sbjct: 115 IFCKAIEIFLPARRMPV 131


>SB_3047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 504 CRRGVVECIIFKMLVEELCADAQ--TTSPGQDLHTKSFSSGDGRTILTKE 361
           C      C++ K  VE L  D Q  T +P +D+     ++GD +T+ T+E
Sbjct: 215 CNGNSPRCLLAK--VESLTIDDQIVTITPEEDIKLSRIANGDDQTVETRE 262


>SB_56389| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.5)
          Length = 473

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 341 VMRLWLCSLVRIVLPSPLEKLLVCKSCPGLVVCASAQSSSTSILN 475
           + R WL  L+ + +  P+  + V  +C  L +C++ Q++  +I+N
Sbjct: 245 IPRSWLSRLLLLPMWVPMVYVWVMCACALLPICSTVQATKRAIIN 289


>SB_55753| Best HMM Match : CbiQ (HMM E-Value=1.7)
          Length = 448

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 341 VMRLWLCSLVRIVLPSPLEKLLVCKSCPGLVVCASAQSSSTSILN 475
           + R WL  L+ + +  P+  + V  +C  L +C++ Q++  +I+N
Sbjct: 229 IPRSWLSRLLLLPMWVPMVYVWVMCACALLPICSTVQATKRAIIN 273


>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
          Length = 565

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 507 PCRRGVVECIIFKMLVEELCADAQTTSPGQD-LHTKSF 397
           P RRG+ E    K +VEE+   + TT  GQ  + T+ F
Sbjct: 523 PARRGLTETSTTKNMVEEISRKSCTTFAGQSAIRTEEF 560


>SB_7718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 507 PCRRGVVECIIFKMLVEELCADAQTTSPGQD-LHTKSF 397
           P RRG+ E    K +VEE+   + TT  GQ  + T+ F
Sbjct: 16  PARRGLTETSTTKNMVEEISRKSCTTFAGQSAIRTEEF 53


>SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)
          Length = 383

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 344 LQNCSRPNTGR--YSCSKVSXAASCFSSLRTMGXTH 243
           L++ +R +TG   Y+C + S + SCFS LR     H
Sbjct: 334 LRSHTRTHTGAKPYNCKRCSKSFSCFSGLRGHNRIH 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,099,564
Number of Sequences: 59808
Number of extensions: 389788
Number of successful extensions: 919
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)