Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L01
         (841 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0R658 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_UPI0000DD7D64 Cluster: PREDICTED: hypothetical protein;...    34   3.9  
UniRef50_UPI00015A592A Cluster: Type IV collagen alpha 4 chain; ...    34   5.1  
UniRef50_Q1E6D0 Cluster: Putative uncharacterized protein; n=1; ...    34   5.1  
UniRef50_UPI0000F2186B Cluster: PREDICTED: hypothetical protein;...    33   6.8  
UniRef50_UPI0000D659F2 Cluster: PREDICTED: similar to TNS1 prote...    33   8.9  

>UniRef50_A0R658 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium smegmatis str. MC2 155|Rep: Putative
           uncharacterized protein - Mycobacterium smegmatis
           (strain ATCC 700084 / mc(2)155)
          Length = 368

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 187 NPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 312
           NP   S+  G G A  D+GA  V  P+G    +P+P PG  G
Sbjct: 31  NPDAGSDTAGQGPAGADSGAPQVAGPRGTHGQRPSPRPGGPG 72


>UniRef50_UPI0000DD7D64 Cluster: PREDICTED: hypothetical protein;
           n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 511

 Score = 34.3 bits (75), Expect = 3.9
 Identities = 21/54 (38%), Positives = 22/54 (40%)
 Frame = +1

Query: 151 GSAPLXNRPYIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 312
           GS     RP  V PP  S P G G      GA      Q  P  +P P PGA G
Sbjct: 389 GSGERATRPECVAPPSPSAPRGRGQG--GGGAGETGGGQRAPAPRPRPRPGAGG 440


>UniRef50_UPI00015A592A Cluster: Type IV collagen alpha 4 chain;
           n=3; Danio rerio|Rep: Type IV collagen alpha 4 chain -
           Danio rerio
          Length = 1639

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 145 GXGSAPLXNRPYIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTPFPGARG 312
           G    P+ ++ Y++  P    P GN  AP D G   +  P G P       PGA G
Sbjct: 297 GPKGKPVESQKYVIGLPGDPGPPGNPGAPGDRGLMGIPGPSGDPGLS---LPGAMG 349


>UniRef50_Q1E6D0 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 825

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 151 GSAPLXNRPYIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKP 288
           GS       Y+VN   +  P  NG A   +G +Y+D   G+P F P
Sbjct: 290 GSGKSTFNKYLVNHLLSQIPPQNGKASSSDGVAYIDLDPGQPEFSP 335


>UniRef50_UPI0000F2186B Cluster: PREDICTED: hypothetical protein; n=1;
            Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
            rerio
          Length = 11202

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 173  ARTSLILPKPPTLMETAPHLSTTVHLTWTVPKAD 274
            A+  ++LP PP L E       +V L+W VP+ D
Sbjct: 8344 AKDPIVLPSPPVLPEAVDKTKDSVSLSWRVPRHD 8377


>UniRef50_UPI0000D659F2 Cluster: PREDICTED: similar to TNS1 protein;
            n=1; Mus musculus|Rep: PREDICTED: similar to TNS1 protein
            - Mus musculus
          Length = 1708

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +2

Query: 161  LLXTARTSLILPKPPTLMETAPHLSTTVHLTWTVPKADLTSSLPLSLVLAVGSKEYLRK 337
            ++ + +TSL  P PP ++ +AP  S+   L+W +P   +    P SL+  + ++  LR+
Sbjct: 874  VMDSMKTSLRRPHPPVVLGSAPP-SSASPLSWLLPLPSILEGAPKSLI-CIATRRPLRR 930


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,313,364
Number of Sequences: 1657284
Number of extensions: 7688170
Number of successful extensions: 21035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21004
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)