Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L01
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.5  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    30   2.0  
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    28   8.1  
07_03_0072 - 13051145-13052362                                         28   8.1  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +1

Query: 157 APLXNRPYIVNPPKASNPXGNGSAPLDNGA--SYVDRPQGRPYFKPTPFPGARG 312
           AP  + P  V PP    P  +G AP   G   S  + P GRP   P P  GA G
Sbjct: 395 APPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMYEPPVGRPNSGPPPSYGAGG 448


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 145 GXGSAPLXNRPYIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPT-PFP 300
           G G+    N+ Y  N PK  +P  NG+        Y   P G+P++ P  P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 198 SLQPXWKRLRTSRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 332
           S+   W RLR +  R +L+ P+P P +  +       RW  K +L
Sbjct: 831 SIIDSWDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875


>07_03_0072 - 13051145-13052362
          Length = 405

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 161 LLXTARTSLILPKPPTLMETAPHLSTTVHLTWTVPKADLTS---SLPLSLVLAVGSKEYL 331
           +L  A T+ +LPKPP+      H S  +     V  + +T+   SLP SL+ A+   E L
Sbjct: 109 VLGMASTAPLLPKPPSTTTAKRHPSPCLQAPQPVGLSPVTAVRWSLPPSLLAALQQSEPL 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,073
Number of Sequences: 37544
Number of extensions: 229628
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)