Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L01
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  

>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +2

Query: 179 TSLILPK-PPTLMETAPHLSTTVHLTWT-VPKADL 277
           TSLI+P+ PP  ++++   STTV L+W+ VP  DL
Sbjct: 562 TSLIVPRRPPVFIDSSSTSSTTVDLSWSHVPTDDL 596


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +2

Query: 137 TLXATXPHLLXTARTSLILPKPP-----TLMETAPHLSTTVHLTWTVPKADLTSSLPLS 298
           TL AT P L  T +T+LI   P      TL+ T P L+T   L  T P+A +T +  ++
Sbjct: 723 TLIATTPSL--TTQTTLIATTPSLTTQTTLIATTPSLTTQTTLIATTPEASITQTTTIA 779


>SB_58292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 134 PTLXATXPHLLXTARTSLILPKPPTLMETAPHLSTTVHLTWT-VPKADLTSSLPL 295
           P L  T P L+ T  T  ++   P L+ T P L TT  L  T  P  D T++LPL
Sbjct: 20  PPLVTTTPPLVTT--TPSLVTTTPLLVTTTPSLVTTTPLLVTNTPPLD-TTTLPL 71



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 149 TXPHLLXTARTSLILPKPPTLMETAPHLSTTVHLTWTVP 265
           T   LL T   SL+   PP +  T P ++TT  L  T P
Sbjct: 3   TTTPLLVTTTPSLVTTTPPLVTTTPPLVTTTPSLVTTTP 41


>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 207 PXWKRLRTSRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNILEN 338
           P  + L T  + CI R    +PT +   P PW    +++N+ ++
Sbjct: 560 PRLEMLNTLLRECIDRHAPLKPTKMTRPPAPWLKELDIQNLQQD 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,425,955
Number of Sequences: 59808
Number of extensions: 226007
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)