Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L01
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    28   9.5  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +1

Query: 139 AXGXGSAPLXNRPYIVNPPKASNPXGNGSAPLDNGASYVDRPQGRPYFKPTP-FPGARG 312
           A G   +P  + P +  PP      G    P   G++ +D   G P  K  P  PG  G
Sbjct: 190 APGEPGSPAKSEPAVPGPPGPPGQAGQQGPPGPPGSNGIDGAPGAPGAKGEPGTPGEPG 248


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 209 LMETAPHLSTTV--HLTWTVPKADLTSSLP 292
           LME A HL TTV  H+T+  P   L  S P
Sbjct: 397 LMENAEHLRTTVQTHVTYNAPPPPLPQSGP 426


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 134 PTLXATXPHLLXTARTSLILPKPPTLMETAPHLSTTVHLTWTVPKADLTSSL 289
           PT   + P    T  T    P  PT M++ P   +T+  + T P    TSS+
Sbjct: 403 PTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPSTMKSSPTTPTTMKTSSI 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,088,946
Number of Sequences: 27780
Number of extensions: 177791
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)