Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_L01
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.66 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.66 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 194 PKPPTLMETAPHLSTTVHLTWTVPKADLT 280
           P+PP  +ETA   S ++++ W     D T
Sbjct: 908 PQPPNSLETAMVASRSINVKWQHKSQDTT 936


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 194 PKPPTLMETAPHLSTTVHLTWTVPKADLT 280
           P+PP  +ETA   S ++++ W     D T
Sbjct: 904 PQPPNSLETAMVASRSINVKWQHKSQDTT 932


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 243  CILRGPSPRPTLLQA 287
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 199 ASNPXGNGSAPLDNGASYVDRP 264
           + N  GN     D+GA+  DRP
Sbjct: 252 SGNAAGNNEDSSDSGAAASDRP 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,094
Number of Sequences: 438
Number of extensions: 2291
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)