Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K23
         (1275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.79 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.8  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 22/53 (41%), Positives = 22/53 (41%)
 Frame = -3

Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
           G  GGS    GG  G RGG    G G       GG R G G  G   G G GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFG-GGRGGARGGGRGGARGGRGGRGGARG-GRGG 59


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 507  AXXPPXPHPXSTPXXPXPTRXPP 575
            A  PP P P + P  P PT  PP
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPP 1051


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,558
Number of Sequences: 5004
Number of extensions: 11903
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 693525122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)