Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K23
         (1275 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   6.0  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   6.0  
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)                   29   7.9  

>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 22/56 (39%), Positives = 24/56 (42%)
 Frame = -3

Query: 682 VRXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
           V  G+ GG     GG GG  GG    GVG+      GG   G G  G   G G GG
Sbjct: 30  VGVGVGGGGV---GG-GGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGGGGG 81


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +3

Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTPXXXS-XXXXXXXXXXNAXXPPXNPXR 680
           PP P   S+   P PTR PP      +  P   S           NA  PP  P R
Sbjct: 270 PPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSR 325


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
 Frame = +3

Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTPXXXS-XXXXXXXXXXNAXXPPXNPXR 680
           PP P   S+   P PTR PP      +  P   S           NA  PP  P R
Sbjct: 182 PPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSR 237


>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
          Length = 593

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTP 605
           PP P P   P  P P   PP       PTP
Sbjct: 467 PPPPPPPPPPPPPPPPPPPPPFPPPPPPTP 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,744,126
Number of Sequences: 59808
Number of extensions: 117888
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4011178900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)