Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_K23
(1275 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 33 0.43
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 32 0.76
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 1.7
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 30 3.1
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 30 3.1
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 30 3.1
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 30 3.1
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.3
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 29 5.3
Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical pr... 29 7.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 7.0
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.43
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGE--X*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GG+ GG GG +GGE G G GG + G G G + G G GG
Sbjct: 188 GGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGG 242
Score = 28.7 bits (61), Expect = 9.3
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -3
Query: 664 GGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXG-VEXG*GXGG 515
GGS + GG GG GG G G GG G G + G G GG
Sbjct: 84 GGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGG 134
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 32.3 bits (70), Expect = 0.76
Identities = 19/50 (38%), Positives = 20/50 (40%)
Frame = -3
Query: 664 GGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
GG+ GG G GG G G GG R G G G G G GG
Sbjct: 78 GGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGG 127
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/52 (40%), Positives = 22/52 (42%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXG 518
G GGS GG GG GG G GS + GG G G G G G G
Sbjct: 792 GGNGGSGGGGGGGGGGSGGS--GGGGSNSNSGGGGGNGGGGNGGGGNGNGGG 841
Score = 28.7 bits (61), Expect = 9.3
Identities = 20/53 (37%), Positives = 21/53 (39%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GG+ GG GG GG G G GG G G G G G GG
Sbjct: 789 GGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNG-GGGNGNGG 840
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 679 RXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*G 524
R G GG GG GG RGG G G G G G G G G
Sbjct: 677 RGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYGGRGGRG 728
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 679 RXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*G 524
R G GG GG GG RGG G G G G G G G G
Sbjct: 718 RGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYGGRGGRG 769
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 30.3 bits (65), Expect = 3.1
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVG--XGXXGVEXG*GXGG 515
G GG+ GG GG GG +GS GG G G G G G GG
Sbjct: 65 GFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQGGGGGG 119
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 679 RXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*G 524
R G GG GG GG RGG G G G G G G G G
Sbjct: 677 RGGYGGGDRGGRGGYGGDRGGRGGYGGGDRGGRGGYGGDRGRGGYGGRGGRG 728
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 29.5 bits (63), Expect = 5.3
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = -3
Query: 679 RXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGGXXA 506
+ G GG GG GG RGG G GG G G G G G GG A
Sbjct: 256 KEGGEGGGRGGRGGRGGFRGG---FRGGRGGFGGPGGPMGGRGGMGGMGGRGRGGQAA 310
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 29.5 bits (63), Expect = 5.3
Identities = 21/58 (36%), Positives = 22/58 (37%)
Frame = -3
Query: 679 RXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGGXXA 506
+ G GG GG GG RGG G GG G G G G G GG A
Sbjct: 256 KEGGEGGGRGGRGGRGGFRGG---FRGGRGGFGGPGGPMGGRGGMGGMGGRGRGGQAA 310
>Z78413-7|CAB01657.1| 352|Caenorhabditis elegans Hypothetical
protein T01C3.7 protein.
Length = 352
Score = 29.1 bits (62), Expect = 7.0
Identities = 31/107 (28%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Frame = -3
Query: 664 GGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXR--VGXGXXGVEXG*GXGGXXAXXAXX 491
GG GG GG RGG G GG R G G G G GG
Sbjct: 10 GGGGGFRGGRGGDRGGSRGGFGGGGRGGYGGGDRGSFGGGDRGGFRGGRGGGDRGGFRGG 69
Query: 490 XXXXRXXXXXXEGSXRXGF-XRGV*XGXXXGAXLXXRSXXGMQXGAT 353
GS R GF RG G GM+ G T
Sbjct: 70 RGGGDRGGFGGRGSPRGGFGGRGSPRGGRGSPRGGRGGAGGMRGGKT 116
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTPXXXSXXXXXXXXXXNAXXPPXNP 674
PP P P P P P PP P+P N P +P
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSP 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,864,763
Number of Sequences: 27780
Number of extensions: 93359
Number of successful extensions: 357
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3558150178
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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