Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_K23
(1275 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01985.1 68417.m00265 expressed protein 34 0.23
At5g46730.1 68418.m05757 glycine-rich protein 32 0.70
At1g27710.1 68414.m03387 glycine-rich protein 31 1.2
At2g30560.1 68415.m03722 glycine-rich protein 31 2.1
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 30 3.7
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 30 3.7
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 3.7
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 4.9
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 4.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 4.9
At1g61080.1 68414.m06877 proline-rich family protein 29 4.9
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 29 6.5
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 29 6.5
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 8.6
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 8.6
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 33.9 bits (74), Expect = 0.23
Identities = 24/56 (42%), Positives = 24/56 (42%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGGXXA 506
G GGS GG GG GG GVG AV G VG G G G G G A
Sbjct: 416 GGAGGSVGAGGGVGGGVGGGVGGGVGG-AVGGAVGGAVGGGGGGSVGGGGRGSGGA 470
Score = 31.9 bits (69), Expect = 0.93
Identities = 24/59 (40%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVG---SXAVXXXGGXRVGXGXXGVEXG*GXGGXXA 506
G GGS GG GG GG GVG AV G VG G G G G G A
Sbjct: 330 GGAGGSVGAGGGVGGGVGGGVGGGVGGGVGGAVGGAVGGAVGGGGGGSVGGGGRGSGGA 388
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVG---SXAVXXXGGXRVGXGXXGVEXG*GXGGXXA 506
G GG+ GG GG GG GVG AV G VG G G G G G A
Sbjct: 262 GGAGGNVGAGGGLGGGVGGGVGGGVGGSVGGAVGGAVGGAVGGGGGGSVGGGGRGSGGA 320
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = -3
Query: 670 LXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
+ GG+ GG G RGG+ G G G G G G G GG
Sbjct: 148 IGGGASGGVGGGGKGRGGKSGGGAGGGVGGGVGAGGGAGGSVGAGGGIGSGG 199
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/53 (39%), Positives = 22/53 (41%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GG GG GG GG G G V GG +G G G G G GG
Sbjct: 458 GSVGGGGRGSGGAGGGTGGSVGAGGG---VGVGGGGGIGGGAGGGVGG-GVGG 506
Score = 29.5 bits (63), Expect = 4.9
Identities = 21/50 (42%), Positives = 21/50 (42%)
Frame = -3
Query: 664 GGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
GG GG GG GG GVG GG VG G G G G GG
Sbjct: 487 GGGGGIGGGAGGGVGGGVGGGVGGGVRGAVGG-AVGGGVGGA--GRGSGG 533
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 32.3 bits (70), Expect = 0.70
Identities = 21/53 (39%), Positives = 21/53 (39%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GG GG GG GG G G GG G G G E G G GG
Sbjct: 227 GAHGGGYGSGGGEGGGYGGGAAGGYGGGG----GGGEGGGGSYGGEHGGGSGG 275
>At1g27710.1 68414.m03387 glycine-rich protein
Length = 212
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GG GG GG G G+G GG G G G+ G G GG
Sbjct: 122 GGGGGGVVIGGGFGGGAGYGSGGGLGWDGGNGGGGPGYGSGGGGIGGGGGIGG 174
>At2g30560.1 68415.m03722 glycine-rich protein
Length = 171
Score = 30.7 bits (66), Expect = 2.1
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
G GGS + GG GG GG G GG + G G G G G GG
Sbjct: 2 GGKGGSGSGGGGKGGGGGGSG----GGRGGGGGGGAKGGCGGGGKSGGGGGGG 50
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = -3
Query: 673 GLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXG 518
G GG+ G GG GG G G GG G G G G G
Sbjct: 155 GYGGGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGG 206
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/64 (26%), Positives = 21/64 (32%)
Frame = +3
Query: 414 PXQTPLXNPXRSDPSXXXXXXRXXXXXXAXXAXXPPXPHPXSTPXXPXPTRXPPXXXTAX 593
P +P+ P P+ A PP P S P P PP T+
Sbjct: 66 PPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPASAPTVSPPPVSPPPAPTSP 125
Query: 594 EPTP 605
PTP
Sbjct: 126 PPTP 129
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +3
Query: 525 PHPXSTPXXPXPTRXPPXXXTAXEPTPXXXSXXXXXXXXXXNAXXPPXNP 674
P P S+P P PT PP P+P A PP NP
Sbjct: 118 PPPESSPPPPPPTEAPPTTPIT-SPSPPTNPPPPPESPPSLPAPDPPSNP 166
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.5 bits (63), Expect = 4.9
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTPXXXSXXXXXXXXXXNAXXPPXNP 674
PP P TP P+ PP PTP S + PP +P
Sbjct: 131 PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSP 183
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.5 bits (63), Expect = 4.9
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXT-AXEPTPXXXSXXXXXXXXXXNAXXPPXNP 674
PP STP P P P T + PTP S N PP +P
Sbjct: 61 PPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHP 114
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.5 bits (63), Expect = 4.9
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXT-AXEPTPXXXSXXXXXXXXXXNAXXPPXNP 674
PP STP P P P T + PTP S N PP +P
Sbjct: 61 PPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHP 114
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 507 AXXPPXPHPXSTPXXPXPTRXPPXXXTAXEPTP 605
A PP P P T P P PP A P P
Sbjct: 547 AAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPP 579
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTP 605
PP P P T P P PP A P P
Sbjct: 537 PPPPPPPGTAAAPPPPPPPPGTQAAPPPPP 566
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 29.1 bits (62), Expect = 6.5
Identities = 18/71 (25%), Positives = 22/71 (30%)
Frame = +3
Query: 393 RXAPXXXPXQTPLXNPXRSDPSXXXXXXRXXXXXXAXXAXXPPXPHPXSTPXXPXPTRXP 572
+ AP P + P P + P A PP P P P P P P
Sbjct: 32 KPAPAPTPPK-PKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKP 90
Query: 573 PXXXTAXEPTP 605
+PTP
Sbjct: 91 APTPPNPKPTP 101
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 29.1 bits (62), Expect = 6.5
Identities = 23/56 (41%), Positives = 24/56 (42%)
Frame = -3
Query: 682 VRXGLXGGSXAXXGG*GGXRGGEX*XGVGSXAVXXXGGXRVGXGXXGVEXG*GXGG 515
V+ GGS GG GG RGG G GS GG G G G G G GG
Sbjct: 82 VQGNSGGGSSGGRGGFGGGRGG----GRGS-----GGGYGGGGGGYGGRGGGGRGG 128
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 8.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTP 605
PP P P S+P P P PP EP P
Sbjct: 592 PPPPTPVSSP-PPTPVYSPPPPPPCIEPPP 620
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 516 PPXPHPXSTPXXPXPTRXPPXXXTAXEPTPXXXS 617
PP P P +P P P PP P P S
Sbjct: 518 PPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHS 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,637,375
Number of Sequences: 28952
Number of extensions: 100664
Number of successful extensions: 832
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3296632504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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