Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_K22
(961 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 38 0.010
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 37 0.023
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 33 0.28
At3g50130.1 68416.m05480 expressed protein ; expression supporte... 27 0.39
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 32 0.65
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 31 0.86
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 31 0.86
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 31 1.5
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 31 1.5
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 30 2.0
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 30 2.6
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 30 2.6
At1g61080.1 68414.m06877 proline-rich family protein 30 2.6
At4g18570.1 68417.m02749 proline-rich family protein common fami... 29 3.5
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 3.5
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 29 6.1
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 6.1
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 23 7.6
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 28 8.0
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 8.0
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 8.0
At3g25500.1 68416.m03171 formin homology 2 domain-containing pro... 25 8.3
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -3
Query: 311 PPXXGGGPXXXXXFXXGGAPXPPPXGXXRPPXPLXFXGXXXGG 183
PP GGGP GG P PP G PP P G GG
Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGG 714
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +3
Query: 183 PPPXXPXKXKGXXGPXX-PXWGGGWGPPXXKXXXXXGPPPXXGGGXP 320
PPP K P P GG GPP GPPP GGG P
Sbjct: 654 PPPRSAGGGKSTNLPSARPPLPGG-GPPPPPPPPGGGPPPPPGGGPP 699
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -2
Query: 627 AXVPXLWGXXXSPPPXGGXXXPPPXPXGPPFP 532
A P G PPP G PPP GPP P
Sbjct: 670 ARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPP 701
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 606 GXXXSPPPXGGXXXPPPXPXGPPFP 532
G PPP GG PPP PP P
Sbjct: 678 GPPPPPPPPGGGPPPPPGGGPPPPP 702
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 314 PPPXXGGGPXXXXXFXXGGAPXPPP 240
PPP GGGP GG P PPP
Sbjct: 682 PPPPPGGGPPP----PPGGGPPPPP 702
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 262 GGPXPPPQXGXXGPXXPXXFXGXXGGG 182
GGP PPP G P P G GG
Sbjct: 688 GGPPPPPGGGPPPPPPPPGALGRGAGG 714
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 591 PPPXGGXXXPPPXPXG 544
PPP GG PPP P G
Sbjct: 691 PPPPGGGPPPPPPPPG 706
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = -3
Query: 695 PPPXXAXPGXAX--PXGXXPXKGXXRXXPXFGGXFXPPXXXGGMXXPPPXPXXPL 537
PPP A G + P P G P PP GG PPP P L
Sbjct: 654 PPPRSAGGGKSTNLPSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGAL 708
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 36.7 bits (81), Expect = 0.023
Identities = 20/51 (39%), Positives = 20/51 (39%)
Frame = +3
Query: 111 PPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPP 263
PPPPPP K APPP P KG GP P GPP
Sbjct: 384 PPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKG-AGPPPPPPMSKKGPP 433
Score = 34.7 bits (76), Expect = 0.092
Identities = 22/67 (32%), Positives = 22/67 (32%)
Frame = +3
Query: 108 PPPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPPXXKXXXXX 287
PPPPPPP PPP P K P P G GPP
Sbjct: 384 PPPPPPPSAAAP-------------PPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKK 430
Query: 288 GPPPXXG 308
GPP G
Sbjct: 431 GPPKPPG 437
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXKGXXRXXPXFGGXFXPPXXXGGMXXPPPXPXXP 540
PPPP A P P P P G PP PP P P
Sbjct: 387 PPPPSAAAPPPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPGNP 439
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Frame = +3
Query: 180 APPPXXPXKXKGXXGPXXPXWGGG----WGPPXXKXXXXXGPPPXXGGGXPFFFCXKXGX 347
+PPP P P GGG + PP PPP GGG +++
Sbjct: 54 SPPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSG 113
Query: 348 XXVXXPPP 371
PPP
Sbjct: 114 NYPTPPPP 121
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXK---GXXRXXPXFGGX----FXPPXXXGGMXXPPPX-PXX 543
PPPP G P G + P +GG + PP G PPP P
Sbjct: 66 PPPPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNYPTPPPPNPIV 125
Query: 542 PLF 534
P F
Sbjct: 126 PYF 128
>At3g50130.1 68416.m05480 expressed protein ; expression supported
by MPSS
Length = 564
Score = 27.5 bits (58), Expect(2) = 0.39
Identities = 13/42 (30%), Positives = 13/42 (30%)
Frame = +3
Query: 111 PPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXP 236
PPPPP K PPP P GP P
Sbjct: 25 PPPPPSFRSIPPRRHFFKKKSKSLPPPPPPLPPARPFGPILP 66
Score = 23.8 bits (49), Expect(2) = 0.39
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 108 PPPPPPP 128
PPPPPPP
Sbjct: 9 PPPPPPP 15
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/91 (24%), Positives = 27/91 (29%)
Frame = +3
Query: 99 ILXPPPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPPXXKXX 278
+ PPPPPPP +PPP P P P + PP
Sbjct: 463 VYSPPPPPPPPPPPPPVY----SPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPP--PPP 516
Query: 279 XXXGPPPXXGGGXPFFFCXKXGXXXVXXPPP 371
PPP +C + PPP
Sbjct: 517 VYSSPPPPPSPAPTPVYCTRPPPPPPHSPPP 547
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 31.5 bits (68), Expect = 0.86
Identities = 21/74 (28%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Frame = +3
Query: 114 PPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPP-----XXKXX 278
PPPP PPP GP P GG PP
Sbjct: 272 PPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQNNMGGPRPPQNYGGTPPPNYGGAPPANN 331
Query: 279 XXXGPPPXXGGGXP 320
PPP GGG P
Sbjct: 332 MGGAPPPNYGGGPP 345
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 19/46 (41%)
Frame = -3
Query: 356 NXGGPXFXAKKKWXPPPXXGGGPXXXXXFXXGGAPXPPPXGXXRPP 219
N GGP PPP GG P GGAP PP G PP
Sbjct: 305 NMGGPRPPQNYGGTPPPNYGGAPPAN---NMGGAP-PPNYGGGPPP 346
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 659 PXGXXPXKGXXRXXPXFGGXFXPPXXXGGMXXPPP 555
P P G P GG PP GG PPP
Sbjct: 241 PPPQRPPMGGPPPPPHIGGSAPPPPHMGGSAPPPP 275
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -2
Query: 651 PXAXKGXXAXVPXLWGXXXSPPPXGGXXXPPPXPXGPPFPXXXTXXGAPRTN 496
P G A P G PPP G PP P P GAP N
Sbjct: 253 PPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAPPQN 304
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -2
Query: 660 PXGPXAXKGXXAXVPXLWGXXXSPPPXGGXXXPPPXPXGPPFPXXXT 520
P P A +P L SPPP PPP PP P T
Sbjct: 38 PPSPPADSSPPPALPSLPPAVFSPPPTVSSPPPPPLDSSPPPPPDLT 84
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXKGXXRXXPXFGGXFXPPXXXGGMXXPPPXP 549
PPPP P P P G P +GG + P GG PP P
Sbjct: 38 PPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGG-YPPAPGYGGY---PPAP 83
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 222 GPXXPXWGGGWGPPXXKXXXXXGPPPXXGGG 314
GP P GGG GP GP P GGG
Sbjct: 74 GPRGPRPGGGGGPGPGPWSGPRGPRPGGGGG 104
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXK--GXXRXXPXFGGX----FXPPXXXGGMXXPPPX-PXXP 540
PPPP + G + P G + P +GG + PP G PPP P P
Sbjct: 53 PPPPSSSGGGGSYYYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPPNPIVP 112
Query: 539 LF 534
F
Sbjct: 113 YF 114
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXK-GXXRXXPXFGGXFX--PPXXXGGMXXPPPXPXXP 540
PPPP P G P + G P GG PP G PPP P P
Sbjct: 182 PPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRPGMP 237
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 591 PPPXGGXXXPPPXPXGPPFP 532
PPP G PPP P PP P
Sbjct: 221 PPPHGMQGPPPPRPGMPPAP 240
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 314 PPPXXGGGPXXXXXFXXGGAPXPPPXGXXRPPXP 213
PPP G P P PPP G PP P
Sbjct: 199 PPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPP 232
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/56 (33%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXK-GXXRXXPXFGGXFX--PPXXXGGMXXPPPXPXXP 540
PPPP P G P + G P GG PP G PPP P P
Sbjct: 182 PPPPYGMRPPPQQFSGPPPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPPRPGMP 237
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 591 PPPXGGXXXPPPXPXGPPFP 532
PPP G PPP P PP P
Sbjct: 221 PPPHGMQGPPPPRPGMPPAP 240
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 314 PPPXXGGGPXXXXXFXXGGAPXPPPXGXXRPPXP 213
PPP G P P PPP G PP P
Sbjct: 199 PPPQYGQRPMIPPPGGMMRGPPPPPHGMQGPPPP 232
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +3
Query: 99 ILXPPPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPPXXKXX 278
I PPPPPPP A PP P P P PP
Sbjct: 520 IAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPP-------PPPPMQN 572
Query: 279 XXXGPPPXXGG 311
PPP G
Sbjct: 573 RAPSPPPMPMG 583
Score = 28.3 bits (60), Expect = 8.0
Identities = 24/91 (26%), Positives = 25/91 (27%), Gaps = 3/91 (3%)
Frame = +3
Query: 108 PPPPPP---PXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPPXXKXX 278
PPPPPP P APPP P P P PP +
Sbjct: 508 PPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPP------PPGTQAA 561
Query: 279 XXXGPPPXXGGGXPFFFCXKXGXXXVXXPPP 371
PPP P G PPP
Sbjct: 562 PPPPPPPPMQNRAPSPPPMPMGNSGSGGPPP 592
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = -3
Query: 698 PPPPXXAXPGXAXPXGXXPXKGXXRXXPXFGGXFXPPXXXGGMXXPPPXPXXPL 537
PPPP P P G P PP G PPP P P+
Sbjct: 523 PPPPPPPPRAAVAPPPPPPPPGTAAAPPP------PPPPPGTQAAPPPPPPPPM 570
>At4g18570.1 68417.m02749 proline-rich family protein common family
members: At3g25690, At4g04980, At5g61090 [Arabidopsis
thaliana]
Length = 642
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 108 PPPPPPPXXXXXXXXXXXXKXXXXAPPPXXP 200
PPPPPPP K PPP P
Sbjct: 313 PPPPPPPLLQQPPPPPSVSKAPPPPPPPPPP 343
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -2
Query: 591 PPPXGGXXXPPPXPXGPPFPXXXTXXGAP 505
PPP P P PP P T GAP
Sbjct: 686 PPPKANISNAPKPPAPPPLPPSSTRLGAP 714
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/69 (30%), Positives = 21/69 (30%)
Frame = +3
Query: 108 PPPPPPPXXXXXXXXXXXXKXXXXAPPPXXPXKXKGXXGPXXPXWGGGWGPPXXKXXXXX 287
PPPPPPP APPP K P G GPP
Sbjct: 714 PPPPPPPPLSKTP-----------APPPPPLSKTPVPPPPPGLGRGTSSGPPPLGAKGSN 762
Query: 288 GPPPXXGGG 314
PPP G
Sbjct: 763 APPPPPPAG 771
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 98 NPXXPPPPPP 127
+P PPPPPP
Sbjct: 542 SPSQPPPPPP 551
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 10/34 (29%), Positives = 11/34 (32%)
Frame = +2
Query: 101 PXXPPPPPPXXXXXXXXXXXXKXXKXXXPPXXXP 202
P PPPPPP + PP P
Sbjct: 572 PPPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPP 605
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = +3
Query: 570 HXPXXXGGXKXSP----KGGXPPPXXLXXPXAXXGGPPRXXXXGGGGXXS 707
H GG K P KGG PP GGPP GGGG S
Sbjct: 43 HGGGGGGGSKPPPHHGGKGGGKPPPH----GGKGGGPPHHGGGGGGGGKS 88
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 541 GXXGXGGGXXXPPXXXGGXXXPPKXGXXRXXPFXG 645
G GGG PP GG PP G P G
Sbjct: 404 GSPSPGGGSGSPPSTGGGSGSPPSTGGGGGSPSKG 438
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 95 LNPXXPPPPPP 127
L P PPPPPP
Sbjct: 37 LFPQSPPPPPP 47
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 10/34 (29%), Positives = 11/34 (32%)
Frame = +2
Query: 101 PXXPPPPPPXXXXXXXXXXXXKXXKXXXPPXXXP 202
P PPPPPP + PP P
Sbjct: 47 PPPPPPPPPPPPPPPPPPAVNMSVETGIPPPPPP 80
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = -2
Query: 666 GXPXGPXAXKGXXAXVPXLWGXXXSPPPXGGXXXPPPXPXGPPFP 532
G P + +P G PPP G PPP G P P
Sbjct: 185 GPPPPQYGGQQRPMMIPPPGGMMRGPPPPHGMQGPPPSRPGMPPP 229
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +3
Query: 99 ILXPPPPPPPXXXXXXXXXXXXKXXXXAPPPXXP 200
+ PPPPPPP +PPP P
Sbjct: 530 VYSPPPPPPPVHSPPPPVHSPPPPPVYSPPPPPP 563
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 102 LXPPPPPPPXXXXXXXXXXXXKXXXXAPPPXXP 200
L PPPPPPP PPP P
Sbjct: 95 LRPPPPPPPPLSAITTTGHHHHRRSPPPPPPPP 127
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 108 PPPPPPPXXXXXXXXXXXXKXXXXAPPPXXP 200
PPPPPPP + PPP P
Sbjct: 98 PPPPPPPLSAITTTGHHHHRRSPPPPPPPPP 128
>At3g25500.1 68416.m03171 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 1051
Score = 25.0 bits (52), Expect(2) = 8.3
Identities = 11/34 (32%), Positives = 11/34 (32%)
Frame = +2
Query: 101 PXXPPPPPPXXXXXXXXXXXXKXXKXXXPPXXXP 202
P PPPPPP K PP P
Sbjct: 526 PPPPPPPPPLPLWGRRSQVTTKADTISRPPSLTP 559
Score = 21.4 bits (43), Expect(2) = 8.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 95 LNPXXPPPPPP 127
L PPPPPP
Sbjct: 521 LQSRVPPPPPP 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.150 0.522
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,917,854
Number of Sequences: 28952
Number of extensions: 362826
Number of successful extensions: 4355
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2720
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2314656624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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