Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K20
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   29   3.7  
SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)                   29   6.4  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                28   8.5  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 21/57 (36%), Positives = 24/57 (42%)
 Frame = +1

Query: 226 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 396
           Q G G  FGT      GLFG AG N        G +TG  +G         ST +GG
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGG 101


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 178 SGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR 357
           S  +S   P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 358 V 360
           V
Sbjct: 752 V 752


>SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)
          Length = 244

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 24  REFLRFDIRS*GAKLDTTQNEYKSVLYLRYN 116
           +EF   D+++ G +L +T+NE KS +  R+N
Sbjct: 61  KEFYNKDVKALGVELYSTENEEKSCMVERWN 91


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -1

Query: 237 SPHLFVPSDVT-----RVSP*GLPADRVIFRVIRRSVNFCVNTHQSCSEDIKQICIHFE 76
           SPH+    DVT          G    +V FRV+ RS+  C+      S ++ ++C  F+
Sbjct: 36  SPHILATEDVTPDEVVEAVNQGFLRGQVDFRVVARSILCCMRHEPDWSLEVVELCEKFK 94


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -2

Query: 536 PYHRQKSGXSYPDPT--HRSLMLSSPDLPPICL 444
           P H QK    YP PT     L LS P  PP  L
Sbjct: 101 PRHAQKESSPYPFPTKFKEVLRLSQPSAPPALL 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,322,696
Number of Sequences: 59808
Number of extensions: 525079
Number of successful extensions: 1113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)