Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K19
         (933 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)                 29   7.1  

>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
          Length = 439

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 420 PXXPPIXIXSSPXXFPXPLIQXKPSTPPPXLFT 322
           P  PP+ +  +P   P P++   P+T PP + T
Sbjct: 65  PPPPPV-VTEAPTTVPPPVVTDAPTTVPPPVVT 96



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 411 PPIXIXSSPXXFPXPLIQXKPSTPPPXLFT 322
           PP  +  +P   P P++   P+T PP + T
Sbjct: 79  PPPVVTDAPTTVPPPVVTDAPTTVPPPVVT 108



 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 411 PPIXIXSSPXXFPXPLIQXKPSTPPPXLFT 322
           PP  +  +P   P P++   P+T PP + T
Sbjct: 91  PPPVVTDAPTTVPPPVVTDAPTTVPPPVVT 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,892,960
Number of Sequences: 59808
Number of extensions: 49323
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2717121828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)