Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K17
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    48   2e-07
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 47.6 bits (108), Expect = 2e-07
 Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
 Frame = +1

Query: 244 ITADLTKESDIEKIIKKTIDHYGKLDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIY 423
           +  DL+ ++DI K+I+    + G +D+L+NNA I    T++N  +  + ++ + N+  + 
Sbjct: 61  LQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLT 120

Query: 424 YLTMLAVPHLLETKGXXXXXXXXXGIRSFPGVL-------AYNISKASVDQLTRCVALEL 582
            + +  V  L++ KG            S   +L       AY  SK ++  LT C+  EL
Sbjct: 121 CM-IQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSEL 179

Query: 583 A--PKGVRVNCVNPGVILTEL 639
           A     ++V  ++P ++ T++
Sbjct: 180 AQCESNIKVISISPDLVETDM 200


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 256 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 378
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 256 LTKESDIEKIIKKTI-DHYGKLD-VLVNNAGIIETGTIENTSL 378
           LT++  +  +    I DH G +  V++ N+G++     E+TSL
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSL 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,244
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)