Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_K16
(915 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 96 1e-18
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 87 8e-16
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 80 9e-14
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 79 1e-13
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 79 2e-13
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 78 4e-13
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 71 5e-11
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 71 5e-11
UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome sh... 60 8e-08
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 59 1e-07
UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1; N... 59 2e-07
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 54 5e-06
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 54 5e-06
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 50 6e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 50 6e-05
UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19; Archa... 48 3e-04
UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 46 0.001
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 45 0.003
UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19; Archa... 42 0.017
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 39 0.20
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 36 1.1
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 35 2.5
UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529... 35 2.5
UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 4.4
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 4.4
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 95.9 bits (228), Expect = 1e-18
Identities = 40/48 (83%), Positives = 45/48 (93%)
Frame = +1
Query: 91 PAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
P+HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 2 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 86.6 bits (205), Expect = 8e-16
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 3 SHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 79.8 bits (188), Expect = 9e-14
Identities = 32/47 (68%), Positives = 40/47 (85%)
Frame = +1
Query: 100 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
+T +K+ L KK+KQNRPIP W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 33 RTLTLKKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 79.4 bits (187), Expect = 1e-13
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = +1
Query: 76 ICSKCPAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
+C AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 38 LCLSQGAHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 78.6 bits (185), Expect = 2e-13
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +1
Query: 85 KCPAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
K AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 79 KMGAHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 77.8 bits (183), Expect = 4e-13
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 88 AHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 70.5 bits (165), Expect = 5e-11
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
A+KT +K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 72 ANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 70.5 bits (165), Expect = 5e-11
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
A+KT +K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 40 ANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome
shotgun sequence; n=6; Fungi/Metazoa group|Rep:
Chromosome 1 SCAF14998, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 503
Score = 60.1 bits (139), Expect = 8e-08
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTI 192
+HKTF IKR LAKK KQNRPIPQW+RM+TGN I
Sbjct: 430 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKI 462
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 59.3 bits (137), Expect = 1e-07
Identities = 25/36 (69%), Positives = 32/36 (88%)
Frame = +1
Query: 100 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 207
KTF IK+ LA+K KQNRPIPQW++M+TG+ IRYN+K
Sbjct: 5 KTFKIKQFLAQKQKQNRPIPQWIQMKTGDKIRYNSK 40
>UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1;
Neosartorya fischeri NRRL 181|Rep: Ribosomal protein
L39, putative - Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / NRRL 181)(Aspergillus fischerianus (strain
ATCC 1020 / DSM 3700 / NRRL 181))
Length = 69
Score = 58.8 bits (136), Expect = 2e-07
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 195
+HK+F K+KLAK +QNRPIPQW+R+RTGNTIR
Sbjct: 36 SHKSFRTKQKLAKAQRQNRPIPQWIRLRTGNTIR 69
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 54.0 bits (124), Expect = 5e-06
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +1
Query: 97 HKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
HK+ K +L K LK+N PIP WV ++T IR+N RR+WRR LK+
Sbjct: 4 HKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 54.0 bits (124), Expect = 5e-06
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +1
Query: 94 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
+ KT ++K +L + LK+NR IP W RM + YN RRHWR KLK+
Sbjct: 3 SRKTALVKTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 50.4 bits (115), Expect = 6e-05
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 94 AHKTFIIKR-KLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 237
AH + K+ +L KK KQNR +P WV ++T + N RR+WRR K+K
Sbjct: 5 AHYKHVAKKIRLGKKTKQNRALPAWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 50.4 bits (115), Expect = 6e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 573 SALMNRPXXGERRFAYWAXFRFLAH 647
+ALMNRP GERRFAYWA FRFLAH
Sbjct: 25 AALMNRPTRGERRFAYWALFRFLAH 49
>UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanococcus
jannaschii
Length = 51
Score = 48.4 bits (110), Expect = 3e-04
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +1
Query: 115 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 237
K +LAK LKQNR +P +V ++T +R++ K R+WRR KLK
Sbjct: 10 KVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 50
>UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 47.2 bits (107), Expect = 6e-04
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 93 GP*DXYY*AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKDKAQVVS 245
GP D A+ QKAE KQTHS+V ++AH KHY + R SLE +A+ VS
Sbjct: 102 GPQDFPDQAEACQKAEAKQTHSTVDQNAHWKHYPLQRQAPSLETYEAEAVS 152
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 46.4 bits (105), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +1
Query: 115 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
K++LAK +QN +P WV M+T + N KRR+WRR L
Sbjct: 23 KKRLAKAERQNTRVPAWVMMKTDMNVTRNPKRRNWRRNDL 62
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 44.8 bits (101), Expect = 0.003
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +1
Query: 115 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 240
K +L KK KQ P+P W+ ++T +R N KRR WR T +++
Sbjct: 10 KIRLQKKTKQAAPVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanosarcina
mazei (Methanosarcina frisia)
Length = 51
Score = 42.3 bits (95), Expect = 0.017
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 115 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
K++LAK KQN +P W ++T + + +RRHWRR L
Sbjct: 9 KKRLAKAHKQNSRVPVWAIVKTNRKVVSHPRRRHWRRGSL 48
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 38.7 bits (86), Expect = 0.20
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 378 DPXMIXYIDEFGQTTTKMQ 434
DP MI YIDEFGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 36.3 bits (80), Expect = 1.1
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -1
Query: 645 ERGSGXAPNTQTASPRXXADSLMQ 574
+R + APNTQTASPR ADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 35.1 bits (77), Expect = 2.5
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +2
Query: 575 CINESAXXRGEAVCVLGALPLPRSLTRXARXV 670
CI + A R EAV VL ALPL RS TR R V
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSV 297
>UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH0529 - Pyrococcus horikoshii
Length = 174
Score = 35.1 bits (77), Expect = 2.5
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = -2
Query: 284 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANL 120
Y +F L HS ++LSFVLLQ L + + V +T G LFCF LA+L
Sbjct: 104 YNLFSGLDHPHSP-HSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASL 157
>UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 138
Score = 34.3 bits (75), Expect = 4.4
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 191 IVFPVRILTH*GMGLFCFSFLANLRLIIXVLWAG 90
+V PVR+ H G G FCF F + LI+ VL G
Sbjct: 1 MVLPVRMRIHWGSGRFCFCFFPRIFLILKVLLDG 34
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 4.4
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 196 YNAKRRHWRRTKL 234
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,571,335
Number of Sequences: 1657284
Number of extensions: 8812023
Number of successful extensions: 16082
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16080
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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