Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K16
         (915 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            93   2e-19
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    91   9e-19
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            82   4e-16
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    29   5.7  
At5g64160.1 68418.m08056 expressed protein                             28   7.5  
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote...    28   9.9  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 37/48 (77%), Positives = 45/48 (93%)
 Frame = +1

Query: 91  PAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
           P+HK+F+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 2   PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 36/48 (75%), Positives = 44/48 (91%)
 Frame = +1

Query: 91  PAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
           P+HK+F+IK+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 2   PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +1

Query: 109 IIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 234
           +IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
           protein ESTs gb|F20110 and gb|F20109 come from this
           gene; contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 458 FTNKAFFSLHFSCGLS 411
           + N+A F LHF+CGLS
Sbjct: 904 YVNRALFLLHFTCGLS 919


>At5g64160.1 68418.m08056 expressed protein
          Length = 227

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 76  ICSKCPAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWR 222
           +C +C   KT+   R +   +  +RP+P     + G+TI+   K +  R
Sbjct: 158 MCVQCGVPKTYTSARGMVCPICGDRPLPDVDAKKKGSTIKDKEKSKRMR 206


>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22643 Haloalkane dehalogenase (EC
           3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 380

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -1

Query: 225 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKXLMGRTF--*TNQVVKNKKX 52
           PS V  L+++++ ++ + P P     +   LFG+F   N  L  R     +  V+KN+K 
Sbjct: 220 PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQNAILAERFIEGGSPYVLKNEKA 279

Query: 51  XI 46
            +
Sbjct: 280 DV 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,585
Number of Sequences: 28952
Number of extensions: 198182
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)