Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K14
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   7.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/53 (26%), Positives = 14/53 (26%)
 Frame = -3

Query: 688 PXXPXGXXXXPPPXPXXXXXXPXPPXPXXPXXXXFXGXXXXGXXXXXPPPPPP 530
           P  P       PP          PP P  P                 PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -3

Query: 658 PPPXPXXXXXXPXPPXPXXPXXXXFXGXXXXGXXXXXPPPPPP 530
           PPP P      P PP P              G     PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP-----------GVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -3

Query: 688 PXXPXGXXXXPPPXPXXXXXXPXPPXPXXP 599
           P    G    PPP P      P PP P  P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 7.4
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -3

Query: 679 PXGXXXXPPPXPXXXXXXPXPPXP 608
           P G    PPP P        PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 21.0 bits (42), Expect(2) = 7.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 547 PPPPPP 530
           PPPPPP
Sbjct: 25  PPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.148    0.485 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,959
Number of Sequences: 5004
Number of extensions: 16348
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)