Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K11
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   6.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.5  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +2

Query: 437 GVAGKVNLFHNNNHXLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHS 616
           G A +V +   + H   A   +  +SP   PNA   N    G   + +  +   LS+  S
Sbjct: 409 GEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSS--S 466

Query: 617 DVINRNDYSAGGKLNLFRS 673
            + +   +S+GG  + F S
Sbjct: 467 GLFDNGLFSSGGLSSNFSS 485


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 438 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 328
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,780
Number of Sequences: 5004
Number of extensions: 45957
Number of successful extensions: 112
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)