Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K11
         (918 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                30   2.3  
SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87)                   30   3.0  
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 29   5.3  
SB_48170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  

>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 25/66 (37%), Positives = 30/66 (45%)
 Frame = -3

Query: 472 VIVEQVDLACDAELLPEAGNAGPGQAQPVPVYVVQSEPCGGSAELVAVVEVGGPDGAEHV 293
           VIVE V + C A ++      G G    V V V       G     AVV VGG  G   V
Sbjct: 714 VIVESVVIDCSAVVVVVGVVVGNGAVAGVVVVVAGGCGVAGVVVGAAVVVVGG-GGVVIV 772

Query: 292 LVVAGE 275
           +VVAG+
Sbjct: 773 VVVAGD 778


>SB_40646| Best HMM Match : eIF-5a (HMM E-Value=0.87)
          Length = 209

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = -3

Query: 517 GRVPDRERLGAQXVVVIVEQVDLACDAELLPEAGNAGPGQAQPVPVYVVQSEPCGGSAEL 338
           GR+ D+ER  A+  + +++ VDL    E  P      P      P    +       AE 
Sbjct: 128 GRITDQERTLARTEIKLIDTVDL----EGGPVGKPVVPAALMNRPTRGERRFAYWALAEC 183

Query: 337 VAVVEVGGPDGAEHVLVVAGER 272
           +    VG  +G   VL VAGE+
Sbjct: 184 ILAYYVGTDEGVSEVLHVAGEK 205


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 1/165 (0%)
 Frame = +2

Query: 245  EPPGPPXKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGF 424
            E  GP  +  +   D NV   I + DFN +  +    A     +++  G    G ++P F
Sbjct: 599  ELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIEGPDA-----DIDSPGWKFKGPKMPKF 653

Query: 425  -GEQLGVAGKVNLFHNNNHXLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASL 601
             G   G  GK     + +  +    F   N    I + P+ N L G +D      V   +
Sbjct: 654  KGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDTP-DVNVKGDI 705

Query: 602  SAAHSDVINRNDYSAGGKLNLFRSPSSSXDFXAGXKKFDTPFYRS 736
                +D+        G K+  F+ PS      +G   FD P ++S
Sbjct: 706  DGPDADLHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDFDGPDFKS 750



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 1/161 (0%)
 Frame = +2

Query: 245 EPPGPPXKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGF 424
           E  GP  +  +   D NV   I + DFN +  +    A     ++NG      G ++P F
Sbjct: 191 ELKGPKVEGDIDTPDVNVKGDIDTPDFNVKGDIDGPDA-----DINGPSWKFKGPKMPKF 245

Query: 425 -GEQLGVAGKVNLFHNNNHXLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASL 601
            G   G  GK     + +  +    F   N    I + P+ N L G +D      V   +
Sbjct: 246 KGPSFGGKGK-----SGDIDIEGPDFDGPNVKGDI-DTPDIN-LKGDIDTP-DVNVKGDI 297

Query: 602 SAAHSDVINRNDYSAGGKLNLFRSPSSSXDFXAGXKKFDTP 724
               +DV        G K+  F+ PS      +G   +D P
Sbjct: 298 DGPDADVHGPGWKFKGPKMPKFKGPSFGGKGKSGDIDYDGP 338


>SB_48170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 617 DVINRNDYSAGGKLNLFRSPSSSXDFXAGXKKFDTPFYRSSWEP 748
           D  N  DYS GG + +  SPSS     +G     T   R   EP
Sbjct: 92  DGTNWTDYSEGGVIKVLTSPSSPGSIFSGNTDSGTVARRGLVEP 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,087,630
Number of Sequences: 59808
Number of extensions: 381454
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)