Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K11
         (918 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24550.1 68416.m03083 protein kinase family protein contains ...    30   1.9  
At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative...    30   2.5  
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot...    29   5.7  
At4g15460.1 68417.m02363 glycine-rich protein                          28   7.5  

>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 245 EPPGPPXKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLAL 370
           +PP PP K P        +S+ G +D++D   L   S GL L
Sbjct: 220 KPPSPPRKPPPPPPPPAFMSSSGGSDYSDLPVLPPPSPGLVL 261


>At3g03080.1 68416.m00304 NADP-dependent oxidoreductase, putative
           similar to probable NADP-dependent oxidoreductase
           (zeta-crystallin homolog)  P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana; similar to allyl alcohol
           dehydrogenase [Nicotiana tabacum] GI:6692816
          Length = 350

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 472 VIVEQVDLACDAELLPEAGNAGPGQAQPVPVYVVQSEPCGGSAELVAVVEVGGPD 308
           V+V+ + L+CD  +    G   PG A   P Y +  EP  G + +  V++ G PD
Sbjct: 47  VLVKNLYLSCDPYMRIRMGKPDPGTAALAPHY-IPGEPIYGFS-VSKVIDSGHPD 99


>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 614

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +2

Query: 503 IRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFRSPSS 682
           ++ S   +P A   N +G  +D +  +     ++++ S    R +YS+ G+L++ R   S
Sbjct: 158 LKQSEILLPLADELNIIGRCIDAIASKACAEQIASSFS----RLEYSSSGRLHMSRQVKS 213

Query: 683 SXD 691
           S D
Sbjct: 214 SGD 216


>At4g15460.1 68417.m02363 glycine-rich protein 
          Length = 148

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 547 HAGRGSGLHVQTEGGRIVERGAL*RHQP 630
           HAG G G H + EGG  + RG    H+P
Sbjct: 92  HAGGGGGGHGEEEGGHGIGRGGGMVHRP 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,108
Number of Sequences: 28952
Number of extensions: 268551
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)