Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K09
         (864 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         32   0.52 
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)              29   3.7  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_49851| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)          29   6.5  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       28   8.5  
SB_48655| Best HMM Match : BAG (HMM E-Value=6.2)                       28   8.5  

>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 467 VEKNATXLREKLQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREEHPGGD 646
           VE+N    +EK    VQN + E  ++A       +  N+K   +I   +R+L EE    D
Sbjct: 582 VEQNEQEKQEKALDAVQNIINEELRMAAAEERKKEIENKK--KEIDDEMRKLEEERTERD 639

Query: 647 QEXPXXRQRQ 676
           ++    R+R+
Sbjct: 640 RQKEEERKRR 649


>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 488 LREKLQADVQ--NTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREEHPGGDQE 652
           +R +++ D Q  NT+ E   + K+VSSN +ET E +   +  ++ RLR +    D E
Sbjct: 411 VRFRIEDDKQQSNTLDEPVAI-KQVSSNDEETKEAMVTPMDPQIDRLRCQETSADLE 466


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 233  HKTLXQXFNSLTKSKDAQDFIKAWKDG-SELRAATAQRLRQESPEERSETRTAR 391
            H+ L Q   +L  SKD +  +K  +DG  E+   T Q + +++PE    T  +R
Sbjct: 1156 HQALPQL--ALAGSKDVEQLLKEMQDGDQEIIGITEQLVSEQAPESTDGTAFSR 1207


>SB_49851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 325 CCNSSTPSXRVSRGALGDANGKAKEALEQSRQNIERT 435
           C N S  +     G  G+ N KAKE  EQ R+ ++ +
Sbjct: 24  CTNQSIQNREGFSGFCGNFNEKAKETTEQRREKLQNS 60


>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
          Length = 565

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 317 ELRAATAQRLRQESPEERSETRTARPRRLWN 409
           E R    QR+ QE  E+ +E  T R  RLW+
Sbjct: 131 EARLEVLQRILQEREEDHAELNTKRLDRLWS 161


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 494 EKLQADVQNTVQESQKLAKKVSSNVQETNEKLA 592
           EKL  D Q TVQ+  +  + +SS++   N +LA
Sbjct: 742 EKLVQDTQATVQQQSEEVRSLSSDIDRLNLQLA 774


>SB_48655| Best HMM Match : BAG (HMM E-Value=6.2)
          Length = 190

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 277 GRTGLHQGLEGRVRAPCCNSSTPSXRVSRGALGDANGK 390
           GRT  H G+       C  S   + R+ RG +G  NG+
Sbjct: 126 GRTNNHSGVVASYFLDCVESVGGTARIVRGDMGTENGR 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,533
Number of Sequences: 59808
Number of extensions: 202883
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)