Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_K09
(864 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 3.2
U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical pr... 29 3.2
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 29 3.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 3.2
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 29 4.3
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 29 4.3
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 29 4.3
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 29 4.3
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 29 4.3
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 29 4.3
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 29 4.3
U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL033536-9|CAA22140.1| 344|Caenorhabditis elegans Hypothetical ... 29 5.7
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 7.5
AF016440-9|AAK68353.2| 287|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical ... 28 7.5
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 7.5
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 554 VSSNVQETNEKLAPKIXGRLRRLREEHPGGDQEXPXXRQRQAVSVDIEL 700
+ SNV + ++ L ++ + +RL+ P GD E +R+A SVD+ +
Sbjct: 310 IESNVTQESDNLMARVPSKTKRLQNIAPEGDME-----RRRAASVDVPM 353
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 512 VQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREE 631
+ VQE +KL ++ +N++ET K++ +I G+ + E+
Sbjct: 2585 IDEKVQEVEKLKAEIDANIEETRAKIS-EIAGKAEEITEK 2623
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 512 VQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREE 631
+ VQE +KL ++ +N++ET K++ +I G+ + E+
Sbjct: 2585 IDEKVQEVEKLKAEIDANIEETRAKIS-EIAGKAEEITEK 2623
>U13645-1|AAA20987.2| 470|Caenorhabditis elegans Hypothetical
protein C05D10.2a protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +1
Query: 292 HQGLEGRVRAPCCNSSTPSXRVSRGALGDANGKAKEALEQSRQNIER 432
H G +R ++ + + + S G + + NG +++Q R+++ER
Sbjct: 402 HDSSSGTLRERAASAESRTSKDSNGEMRNGNGNTPSSIKQRRRSVER 448
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 512 VQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREE 631
+ VQE +KL ++ +N++ET K++ +I G+ + E+
Sbjct: 399 IDEKVQEVEKLKAEIDANIEETRAKIS-EIAGKAEEITEK 437
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 512 VQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREE 631
+ VQE +KL ++ +N++ET K++ +I G+ + E+
Sbjct: 2585 IDEKVQEVEKLKAEIDANIEETRAKIS-EIAGKAEEITEK 2623
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 512 VQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLREE 631
+ VQE +KL ++ +N++ET K++ +I G+ + E+
Sbjct: 2585 IDEKVQEVEKLKAEIDANIEETRAKIS-EIAGKAEEITEK 2623
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 110 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 151
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 172 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 213
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 183 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 224
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 494 EKLQADVQNTVQESQKLAKKVSSNVQETNE--KLAPKIXGRLRRLREEH 634
EK+ DV+N E ++L K VSS + + E ++ +L++ ++EH
Sbjct: 235 EKIAKDVKNKEGEIEELKKSVSSEIVKATEAAHATDQLRKKLQKQQDEH 283
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 110 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 151
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 172 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 213
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 500 LQADVQNTVQESQKLAKKVSSNVQETNEKLAPKIXGRLRRLRE 628
LQA VQN QE+++L+ K+ +NV +L KI + R +
Sbjct: 183 LQATVQNIAQETEQLSNKL-NNVASDEAELDEKIERKKREYEQ 224
>U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical
protein F56D2.2 protein.
Length = 451
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +2
Query: 197 FFKDIEHHTXEFHKTLXQXFNSLTKSK----DAQDFIKAWKDGSELRAATAQRLRQESPE 364
F + + F Q F+ + + K D + +K WKDG E A A+ RQ E
Sbjct: 259 FLAECSYCNFSFCNLCKQTFHGIERCKWKKGDKELLVKRWKDGDE--AEKAEMCRQFGGE 316
Query: 365 ERSETRTAR 391
+R E R
Sbjct: 317 KRVEELVER 325
>AL033536-9|CAA22140.1| 344|Caenorhabditis elegans Hypothetical
protein Y53C10A.6a protein.
Length = 344
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 476 NATXLREKLQADVQNTVQESQKLAKK-VSSNVQETNEKLAPKIXGRLRRLREEHPG 640
N + ++ AD + S K+ +K VS++V + + APKI +L + ++H G
Sbjct: 280 NLRRIIARIGADKTEKEEISPKMTRKRVSNDVSNESARGAPKIVKKLLKAADQHAG 335
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 331 NSSTPSXRVSRGALGDANGKAKEALEQSRQNIERTXEELR 450
+++ P+ S G+LG+ + + L + +Q++ER +ELR
Sbjct: 47 SNAQPTTHQSTGSLGNKSAGMDDELFRKQQDLERRAQELR 86
>AF016440-9|AAK68353.2| 287|Caenorhabditis elegans Hypothetical
protein F29G9.7 protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 254 FNSLTKSKDAQDFIKAWKDGSELR 325
+NS+ +D +FIK W DG L+
Sbjct: 166 YNSMLTERDVNEFIKLWLDGKWLQ 189
>AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical
protein F39G3.5a protein.
Length = 251
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 56 TPLC-CSPGSHLLRXQISRQYIMAAKFVVLFACIALAQGAMVRRDAPXFFKDI 211
T LC CSPG + R + + F+V L G ++ D P F D+
Sbjct: 156 TYLCPCSPGKYRARLMPIHRAVGVGCFIVACVQCCLGYGNILLEDQPGCFSDL 208
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 331 NSSTPSXRVSRGALGDANGKAKEALEQSRQNIERTXEELR 450
+++ P+ S G+LG+ + + L + +Q++ER +ELR
Sbjct: 47 SNAQPTTHQSTGSLGNKSAGMDDELFRKQQDLERRAQELR 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,433
Number of Sequences: 27780
Number of extensions: 154541
Number of successful extensions: 620
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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