Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K08
         (865 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VI80 Cluster: CG14608-PA; n=2; Sophophora|Rep: CG1460...    38   0.25 
UniRef50_Q07LN1 Cluster: AMP-dependent synthetase and ligase; n=...    34   5.3  
UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; ...    33   7.1  

>UniRef50_Q9VI80 Cluster: CG14608-PA; n=2; Sophophora|Rep: CG14608-PA
            - Drosophila melanogaster (Fruit fly)
          Length = 1114

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 29/79 (36%), Positives = 40/79 (50%)
 Frame = +1

Query: 163  TTRYRRLLVWAKNAVTAFH*GLVASSLCYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTT 342
            T+R R      +  VT F  G  A++  Y T  T  Y T   +  T  +GAG  S++ TT
Sbjct: 1012 TSRQRLTTTTNRIPVTTFRRGGAAAAE-YFTSTTPGYTTTTDLPTTTGLGAG--SYEETT 1068

Query: 343  SFDSIDLEELSEPTTTLQP 399
             F+ I +E+L E TTT  P
Sbjct: 1069 KFE-IRVEDLEEATTTTAP 1086


>UniRef50_Q07LN1 Cluster: AMP-dependent synthetase and ligase; n=2;
           Proteobacteria|Rep: AMP-dependent synthetase and ligase
           - Rhodopseudomonas palustris (strain BisA53)
          Length = 511

 Score = 33.9 bits (74), Expect = 5.3
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
 Frame = +1

Query: 184 LVWAKNAVTAFH*GLVASSLCYLTMFTNVYNTGLLITLTNYIGAGS----HS-FDRTTSF 348
           L W  NAV + H   + S+   LT     +  GL I  T  + AG+    H+ FD   + 
Sbjct: 179 LFW--NAVNSAHMHDLTSADRVLTTLPMFHVGGLNILTTPAMHAGASVTLHAKFDPGEAI 236

Query: 349 DSIDLEELSEPTTTLQPAQQSSXIAPPQWGR 441
           D+I+ E ++   T L PAQ ++ +A P+W R
Sbjct: 237 DTIERERIT--LTVLVPAQLTAMMAHPRWNR 265


>UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B;
           n=12; Euryarchaeota|Rep: DNA-directed RNA polymerase
           subunit B - Thermoplasma acidophilum
          Length = 1195

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
 Frame = +1

Query: 301 NYIGAG---SHSFDRTTSFDSID-LEELSEPTTTLQPAQQSSXIAPPQWGRIRASDDDSN 468
           N+IG     S   DR ++  +I  L  +  P T  QP  ++  + P QWGRI  ++    
Sbjct: 448 NWIGGRTGVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEG 507

Query: 469 KCCMVACQHRLCGRTTQ 519
           + C +     L    TQ
Sbjct: 508 QNCGLVKNAALLINVTQ 524


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,628,538
Number of Sequences: 1657284
Number of extensions: 11537071
Number of successful extensions: 24599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24592
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)