Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K07
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.15 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.8  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -2

Query: 565 PXXXXPXPXXPPXXXXXXPXPPPPXXPXPPPPPPXXXPXPXPP 437
           P    P P  PP        PP P  P P P PP   P    P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVP-PLPLPPIFPPTMINP 196



 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = -1

Query: 518 PXPXPPPPXXPPXPPPPPPXXPXXXXPPPPXXPP-PXP 408
           P   P P    P P  PP        PP P  PP P P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLP 186


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -2

Query: 565 PXXXXPXPXXPPXXXXXXPXPPPPXXPXPPPPPPXXXPXPXPP 437
           P    P P  PP         P P  P P P PP   P    P
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVP-PLPLPPIFAPTMINP 196



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = -1

Query: 518 PXPXPPPPXXPPXPPPPPPXXPXXXXPPPPXXPP-PXP 408
           P   P P    P P  PP         P P  PP P P
Sbjct: 149 PKYEPNPSIIDPGPALPPAGFLCNNYLPLPQVPPLPLP 186


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 530 LXPPPXPXPPPPXXPPXPPP 471
           L PPP P   PP  P    P
Sbjct: 735 LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 530 LXPPPXPXPPPPXXPPXPPP 471
           L PPP P   PP  P    P
Sbjct: 627 LPPPPHPHHQPPRNPVGTNP 646


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 498 PXXPPXPPPPP 466
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105



 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 497 PXXPPXPPPPP 465
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 530 LXPPPXPXPPPPXXPPXPPPPP 465
           L  PP P P P       P PP
Sbjct: 247 LENPPTPKPRPTKVSRRKPRPP 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.155    0.525 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,436
Number of Sequences: 336
Number of extensions: 3465
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)