Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K06
         (1303 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    33   0.65 
04_03_0902 + 20707834-20708187                                         32   1.1  
06_01_0486 - 3455030-3455770                                           31   2.0  
04_03_0904 + 20717005-20718087                                         30   3.5  
01_01_0070 - 542603-542686,542803-543441                               30   3.5  
12_02_0299 - 17051570-17052474,17053542-17053755                       30   4.6  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   6.1  

>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 21/70 (30%), Positives = 25/70 (35%)
 Frame = +1

Query: 1087 PRTPKYPPXSXXPXWXPXTXXPXTPDTXPPIRXXVXPXLXXXXHXPGQXSNPAXPXLPXX 1266
            P  P   P    P   P +  P TP   PP+   + P         G    PA P LP  
Sbjct: 1147 PPLPSDSPPCQPPL--PPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLP-- 1202

Query: 1267 XLYPPPXKKP 1296
             + PPP   P
Sbjct: 1203 -IQPPPIPPP 1211


>04_03_0902 + 20707834-20708187
          Length = 117

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +1

Query: 1060 RXXHAATSXPRTPKYPPXSXXPXWXPXTXXPXTPDTXPPI 1179
            R  H  T+ PRTP Y P    P   P T  P TP T  PI
Sbjct: 52   RNSHTKTNTPRTPLYAPPPPLPHTSP-TPEP-TPPTYSPI 89


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
 Frame = +1

Query: 1087 PRTPKYPPX-SXXPXWXPXTXXPXTPDTXPPIRXXVXPXLXXXXHXPGQXSNPAXPXLPX 1263
            PR P  PP     P + P    P TP   PP      P        P        P  P 
Sbjct: 84   PRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPS 143

Query: 1264 XXLYPPPXKKPS 1299
               Y PP   P+
Sbjct: 144  PPPYVPPPSPPA 155


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
 Frame = +1

Query: 1078 TSXPRTPKYPPXSXXPXWXPXTXXPXTPDTXP---PIRXXVXPXLXXXXHXPGQXSNPAX 1248
            T  P  P Y P    P   P T  P  P   P   P      P      + P    NP  
Sbjct: 170  TPTPTPPSYKP-QPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPP 228

Query: 1249 PXLPXXXLYPPPXKKPS 1299
               P     PPP  KP+
Sbjct: 229  TYKPQPKPNPPPTYKPA 245


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
 Frame = +1

Query: 1072 AATSXPRTP-KYPPXSXXPXWXPXTXXPXTPDTXPPIRXXVXPXLXXXXHXPGQXSNPAX 1248
            A  + P  P K PP +  P   P T  P TP   PP      P        P     PA 
Sbjct: 59   ATPTPPVAPAKAPPVA--PAVAPVTPPPPTPKKAPPPPVTPPPVTPPPVTPPPVSPPPAT 116

Query: 1249 PXLPXXXLYPPPXKKPS 1299
            P        PPP   P+
Sbjct: 117  PPPALPPSTPPPVAAPA 133


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +1

Query: 1105 PPXSXXPXWXPXTXXPXTPDTXPPIRXXVXPXLXXXXHXPGQXSNPAXPXLPXXXLYPPP 1284
            PP    P   P    P  P   PP      P L    H P   S    P  P     PPP
Sbjct: 272  PPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPP 331

Query: 1285 XKKP 1296
               P
Sbjct: 332  PSFP 335


>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
            1211452-1211878,1212091-1213219,1213623-1213746,
            1214207-1214278,1215480-1215578,1215617-1215640,
            1215704-1215745,1215815-1215895,1215983-1216114,
            1216115-1216196,1216271-1216365,1218499-1218570,
            1218676-1218792,1219379-1219447,1219521-1219587,
            1219886-1220025
          Length = 1269

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
 Frame = +1

Query: 1075 ATSXPRTPKYPPXSXXPXWXPXTXXPXTPDTXPPIRXXVXPXLXXXXHXPGQXSN----- 1239
            A S P  P  PP    P     +  P  P   PP+   + P        P    N     
Sbjct: 560  AFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPP 619

Query: 1240 --PAXPXLPXXXLYPPPXKKP 1296
              P  P LP   + PPP   P
Sbjct: 620  PPPPPPPLPNHSVLPPPPPPP 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,024
Number of Sequences: 37544
Number of extensions: 176336
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4062238548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)